Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30278.Seq
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 31 1.3
SB_3663| Best HMM Match : MBT (HMM E-Value=0) 30 2.3
SB_28488| Best HMM Match : PAX (HMM E-Value=0) 29 4.1
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 28 7.1
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29) 28 9.4
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21) 28 9.4
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39) 28 9.4
>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQ 350
A +KE ++ RK+++GKP+P+ K PTRK +K + + +
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRKRVKRPEKLNKR 336
>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 136 YGVGVVNRYALFLDDETDPLDALKAREQ 219
Y +GV NR+ L L DE DP K E+
Sbjct: 6 YSIGVNNRFGLLLSDEEDPETTFKESEK 33
>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 320
G+ +QK+++ RK N+GKP P +K + + G
Sbjct: 46 GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTR-KGIKETQNVKSQXIKSGEQQK 377
KSA GEG + ++ +K N G K K +T + K +E + K Q I+ +++K
Sbjct: 492 KSATGGEGKEAPAKKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKKQQIQEDKEKK 550
>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
Length = 327
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 207 SARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPT 311
SA + + ++E++ KE + KP+P+P +PT
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLPT 192
>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
Length = 551
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +3
Query: 234 KEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQXIKSGEQQKG 380
K++++ +++KGK + K K ++P+R + ++ S K ++ G
Sbjct: 171 KKERKDEEDDKGKEDEKVEKNSSLPSRHNFSSSYSIASILKKPSAEEDG 219
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 213 RAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQXIKSGEQQKGK 383
+ G+GA ++++ + K+ KG E + K T K+ Q +GEQ+KG+
Sbjct: 25 KEGKGATEQEKGAIKQGKGATEQE--KEATEQGNGASKQGTGASEQGKGAGEQEKGE 79
>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
Length = 462
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQXIKSGEQQK 377
K AR + ++Q++ +E K + K A+ R+G K + K++ + ++QK
Sbjct: 99 KRARTETTRRGQEQKTPEEGKNRNHQKKARTENTRRRQGEKPPEEGKNRNTRKRQEQK 156
>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
Length = 791
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 207 SARAGEGAQ--KEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQXIKSGE 368
+A GE A +D + K +K K +P+ K VT+ + G+K VK + S +
Sbjct: 135 NADYGEAASLTADDSTAHKSDK-KHDPEAKKQVTITVQPGVKPKPTVKKRSTPSAD 189
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 252 RKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQXIK-SGEQQKGKG 386
++E + KP P P + KG E++ K + K GE +K KG
Sbjct: 1490 KEEPEEKPSPSPKTANKSESEKGKGESEKDKGESEKDKGESEKDKG 1535
>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 222 EGAQKEDQRSRKENKGKPEPKPAKG 296
EG KED KE KGK E +G
Sbjct: 875 EGKNKEDNEKEKEKKGKDEKDEKEG 899
>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
Length = 721
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKP 287
+ SA + A++E+ +R+EN P+P+P
Sbjct: 672 LSSAEPSKAAEQEETSTREENSVDPQPEP 700
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,042,334
Number of Sequences: 59808
Number of extensions: 308007
Number of successful extensions: 796
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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