Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30276.Seq
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 9e-26
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10) 34 0.091
SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1) 29 1.9
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24) 28 4.5
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74) 28 4.5
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27) 28 4.5
SB_10771| Best HMM Match : DUF1610 (HMM E-Value=0.74) 27 7.9
SB_6092| Best HMM Match : DUF1610 (HMM E-Value=0.74) 27 7.9
SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74) 27 7.9
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 113 bits (272), Expect = 9e-26
Identities = 52/60 (86%), Positives = 57/60 (95%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
AISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 48 AISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107
Score = 57.6 bits (133), Expect(2) = 4e-09
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +1
Query: 145 KLQEPILLLGKEKFSMVXIRXTVKGGGHVAQVYAIRQLFQR 267
K++EPILLLGKE+F V IR VKGGGH +++YAIRQ +
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51
Score = 20.6 bits (41), Expect(2) = 4e-09
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1
Query: 19 QAVQVFGRK 45
Q+VQVFGRK
Sbjct: 3 QSVQVFGRK 11
>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
Length = 119
Score = 33.9 bits (74), Expect = 0.091
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 237 SLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 380
+++++T + L AF QKY+D +KE +Q+ + +LV+ R CE
Sbjct: 43 AVKHKTHVDTVL-AFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89
>SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)
Length = 263
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 73 KRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRXTVKGGGHVAQVYAIR 252
++G+G++RV GR + + Y+L+ PI+L K + + I + GH+ Q +
Sbjct: 86 QKGNGLIRVGGR----IGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHMGQESVLS 141
Query: 253 QL 258
L
Sbjct: 142 SL 143
>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1575
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSXXQSRVVVM*HKFTLSDSYF 262
T W+ +C + R SF S R WL + + H F DSYF
Sbjct: 491 TCKEWSMDRLECTTCGVRRHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 544
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 189 REFFLAEQKDRFLKFVLQQSGXNQ--VQWAP 103
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 378
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSXXQSRVVVM*HKFTLSDSYF 262
T W +C + R SF S+R WL + + H F DSYF
Sbjct: 289 TCKEWPMDRLECTTCGVRKHSFTSSRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 342
>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
Length = 513
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 222 WSCSTSLRYQTAISKA 269
WSCSTS+R +T+I KA
Sbjct: 155 WSCSTSMRNRTSIFKA 170
>SB_10771| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 288
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSXXQSRVVVM*HKFTLSDSYF 262
T W +C + R SF S R WL + + H F DSYF
Sbjct: 118 TCKEWPMDRLECTTCGVRKHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 171
>SB_6092| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 469
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSXXQSRVVVM*HKFTLSDSYF 262
T W +C + R SF S R WL + + H F DSYF
Sbjct: 284 TCKEWPMDRLECTTCGVRKHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 337
>SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 637
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSXXQSRVVVM*HKFTLSDSYF 262
T W +C + R SF S R WL + + H F DSYF
Sbjct: 566 TCKEWPMDRLECTTCGVRKHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 619
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,131
Number of Sequences: 59808
Number of extensions: 325444
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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