Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30272.Seq
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    91   2e-19
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    89   5e-19
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    88   2e-18
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    29   0.99 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.3  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    26   5.3  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   7.0  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   9.2  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 47/89 (52%), Positives = 64/89 (71%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
           + RK++QL RL QINNGVFV+ NKAT  M      Y+ +G PNLK+VREL+YKRGF K++
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVN 165

Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
            QRI +   N+I+E  L K++I L ++DL
Sbjct: 166 KQRIALS-DNAIIEAALGKYSI-LSIEDL 192



 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
 Frame = +3

Query: 222 AKEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRI 398
           A E     Q++RE+  KRAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRI
Sbjct: 38  AAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRI 97

Query: 399 RGINQVSPKSVKFCNCL 449
           RGIN + PK+ K    L
Sbjct: 98  RGINNIPPKARKIMQLL 114


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 45/89 (50%), Positives = 63/89 (70%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
           + RK++QL RL QINNG+FV+ NKA   M      Y+ +G PN K+VREL+YKRGF K++
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164

Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
            QRIP+   N+I+E  L K++I L ++DL
Sbjct: 165 KQRIPLS-DNAIIEAALGKYSI-LSVEDL 191



 Score = 82.6 bits (195), Expect = 6e-17
 Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
 Frame = +3

Query: 207 EITGYAKEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLA 383
           +I   A E     Q++RE+  KRAE Y  EYR  ER++I LAR+AR  GNY+VP E KL 
Sbjct: 32  QIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLI 91

Query: 384 FVIRIRGINQVSPKSVKFCNCL 449
           FV+RIRGIN + PK+ K    L
Sbjct: 92  FVVRIRGINNIPPKARKIMQLL 113


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 43/89 (48%), Positives = 64/89 (71%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
           ++RKVL+L RL +INN VFVR NKA   M      Y+ +G PNL SVREL+YKRGF K++
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKIN 163

Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
           GQRI +   N+++E+ L K+++ + ++D+
Sbjct: 164 GQRIALS-DNALIEEALGKYDV-ISIEDI 190



 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 32/68 (47%), Positives = 44/68 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  +E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK
Sbjct: 45  KNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPK 104

Query: 426 SVKFCNCL 449
             K    L
Sbjct: 105 IRKVLRLL 112


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 222 AKEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 353
           AKE FF HQ E E  ++ ++ +K +R +E DE+      + + N
Sbjct: 47  AKEDFFVHQHEIEQLRKLKESLKLHR-EELDELESRVDKKMKSN 89


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 308  FLDAVFLDVLFSPLEDFPFFLMAEERLFSVTC 213
            FL +V+  +  S +ED+   L  E+++FSV C
Sbjct: 1092 FLQSVYSSLSESQVEDYQMELFREKQIFSVLC 1123


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 270 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 371
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 763 EGPTGNLIRGTWKLFLQTVEESQGMEVLQTQI 668
           +GPT N I   WK+  Q+V +S G+ V+ T++
Sbjct: 96  QGPTSNSIDVFWKMVWQSVPKS-GIIVMLTKL 126


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 657 LRSLFSTMLFGK*IGIRCPLSLANPRL 577
           + SL S+  F + IG RC L L +PR+
Sbjct: 895 ISSLCSSQAFAEFIGDRCELDLNDPRV 921


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 653 LKHNIYLCLKDLH 691
           +K NIY CLKDL+
Sbjct: 150 MKENIYTCLKDLY 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,920
Number of Sequences: 5004
Number of extensions: 62354
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)