Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30272.Seq
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   105   5e-23
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    33   0.30 
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      31   1.2  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    31   1.2  
Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   4.9  
AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical...    28   6.5  
AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical...    28   6.5  
AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical ...    28   6.5  
AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  105 bits (251), Expect = 5e-23
 Identities = 51/87 (58%), Positives = 67/87 (77%)
 Frame = +2

Query: 428 RKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLSGQ 607
           RK LQ+ RLRQINNGVFV+LNKAT+ +      Y+AWGYPN K++ +L+YKRG+AK+ G 
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161

Query: 608 RIPIHFPNSIVEKRLLKHNIYLCLKDL 688
           R+PI   N+IVE+ L K NI +CL+DL
Sbjct: 162 RVPI-TDNTIVEQSLGKFNI-ICLEDL 186



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 33/63 (52%), Positives = 50/63 (79%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +++ + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100

Query: 426 SVK 434
             K
Sbjct: 101 PRK 103


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +1

Query: 247 KKKGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 426
           KK+ K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 427 P*SSATV*TAP 459
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 356  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N    ++ +++SP
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1402


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 356  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N    ++ +++SP
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1402


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 356  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N    ++ +++SP
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1389


>Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical
           protein F07A5.4 protein.
          Length = 259

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = +2

Query: 530 IAWGYPNLKSVRELVYKRGFAKLSGQRIPIHFPNSIVEKRLL-----KHNIYLCLKDLHS 694
           I W +     + EL   R   +L+  R+P    +S +   +      KH   +C++  HS
Sbjct: 20  IGWIFYQNIQINELQINRHKRELNSNRLPKTDDDSTIFMPIYAQVSKKHIRKVCMEHFHS 79

Query: 695 LXFFHCLEKKFPS 733
           L  +  LEKK PS
Sbjct: 80  LKHYRELEKKEPS 92


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 347 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 469
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


>AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10c protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 569 THXHSLSWGIPKQCKGSAIRTY 504
           TH ++LSW +PK   GS  R+Y
Sbjct: 368 THDYALSWDMPKVHFGSVARSY 389


>AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10b protein.
          Length = 930

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 569 THXHSLSWGIPKQCKGSAIRTY 504
           TH ++LSW +PK   GS  R+Y
Sbjct: 376 THDYALSWDMPKVHFGSVARSY 397


>AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10a protein.
          Length = 959

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 569 THXHSLSWGIPKQCKGSAIRTY 504
           TH ++LSW +PK   GS  R+Y
Sbjct: 405 THDYALSWDMPKVHFGSVARSY 426


>AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical
           protein Y76A2A.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 220 TLKRRSSAIKKKGKSSRGLNSTSRNTASRNVMK---SD*PDKHAIVATTTF 363
           T K  S + K+KGKSS+  +S+S+ T SR  ++    D P+K       TF
Sbjct: 57  TAKENSQSSKRKGKSSK-KSSSSKKTRSRLSIRRTLRDDPNKEMKATLLTF 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,902
Number of Sequences: 27780
Number of extensions: 343284
Number of successful extensions: 838
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)