Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30272.Seq
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 103 1e-22
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 103 1e-22
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 102 3e-22
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 102 3e-22
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 102 3e-22
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 101 5e-22
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 59 3e-09
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 3.5
At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein co... 29 4.6
At1g01900.1 68414.m00107 subtilase family protein contains simil... 28 8.0
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 103 bits (248), Expect = 1e-22
Identities = 51/89 (57%), Positives = 69/89 (77%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
+ +K+LQL RLRQI NGVF+++NKATVNM Y+ +GYPNLKSV+EL+YKRG+ KL+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 162
Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
QRI + NSIV++ L KH I +C++DL
Sbjct: 163 HQRIAL-TDNSIVDQALGKHGI-ICVEDL 189
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 261 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 440
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 49 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 108
Query: 441 NCL 449
L
Sbjct: 109 QLL 111
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 103 bits (248), Expect = 1e-22
Identities = 51/89 (57%), Positives = 69/89 (77%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
+ +K+LQL RLRQI NGVF+++NKATVNM Y+ +GYPNLKSV+EL+YKRG+ KL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 157
Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
QRI + NSIV++ L KH I +C++DL
Sbjct: 158 HQRIAL-TDNSIVDQALGKHGI-ICVEDL 184
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 261 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 440
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 44 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 103
Query: 441 NCL 449
L
Sbjct: 104 QLL 106
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 102 bits (244), Expect = 3e-22
Identities = 50/89 (56%), Positives = 68/89 (76%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
+ +K+LQL RLRQI NGVF+++NKAT+NM Y+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
QR + NSIV++ L KH I +C++DL
Sbjct: 160 HQRTAL-TDNSIVDQGLGKHGI-ICVEDL 186
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 102 bits (244), Expect = 3e-22
Identities = 50/89 (56%), Positives = 68/89 (76%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
+ +K+LQL RLRQI NGVF+++NKAT+NM Y+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
QR + NSIV++ L KH I +C++DL
Sbjct: 160 HQRTAL-TDNSIVDQGLGKHGI-ICVEDL 186
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 102 bits (244), Expect = 3e-22
Identities = 50/89 (56%), Positives = 68/89 (76%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
+ +K+LQL RLRQI NGVF+++NKAT+NM Y+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
QR + NSIV++ L KH I +C++DL
Sbjct: 160 HQRTAL-TDNSIVDQGLGKHGI-ICVEDL 186
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 101 bits (242), Expect = 5e-22
Identities = 50/89 (56%), Positives = 68/89 (76%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
+ +K+LQL RLRQI NGVF+++NKAT+NM Y+ +G+PNLKSV+EL+YKRG+ KL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLN 157
Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
QRI + NSIVE+ L KH I +C +DL
Sbjct: 158 HQRIAL-TDNSIVEQALGKHGI-ICTEDL 184
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/68 (52%), Positives = 47/68 (69%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
+ + IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 39 ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 98
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 99 TKKILQLL 106
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/89 (31%), Positives = 53/89 (59%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
+ +++L +L+ + GVF + + + Y+ +GYPN KSV++L+YK+G +
Sbjct: 102 KTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIE 161
Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
G +P+ N+I+E+ L +H I L ++DL
Sbjct: 162 GNPVPL-TDNNIIEQALGEHKI-LGIEDL 188
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 267 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 446
KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N
Sbjct: 50 KRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNN 109
Query: 447 L 449
L
Sbjct: 110 L 110
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 271 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 426
G + T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
>At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 633
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 517 RYVHIHSSLIQTYKHTIVYLAQSKQLQNFTD 425
RYV + SLI Y+ T++ L SK +N TD
Sbjct: 387 RYVMNYISLISEYRPTLIDLIMSKPSRNATD 417
>At1g01900.1 68414.m00107 subtilase family protein contains
similarity to cucumisin-like serine protease GB:AAC18851
GI:3176874 from [Arabidopsis thaliana]
Length = 774
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -3
Query: 535 SNVKARRYVHIHSSLIQTYKHTIVYLAQSKQLQNFTDFGETWLIPRIRMTNANLAS 368
SNV +R+ ++ ++ + KH + L S Q +N D + + +P I N S
Sbjct: 35 SNVSSRKQTYVIHTVTTSTKHIVTSLFNSLQTENIND--DDFSLPEIHYIYENAMS 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,902,588
Number of Sequences: 28952
Number of extensions: 323129
Number of successful extensions: 854
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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