Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30267.Seq
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   112   7e-26
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   112   7e-26
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.81 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    28   1.9  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   5.7  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   7.6  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  112 bits (269), Expect = 7e-26
 Identities = 56/92 (60%), Positives = 65/92 (70%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRSASISV 284
           TG VYNVT  ++GV++ K V G  Y    ++V
Sbjct: 61  TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNV 91



 Score =   99 bits (238), Expect = 4e-22
 Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
           R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAPP  AH VS
Sbjct: 83  RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVS 142

Query: 434 -GTEKPVLLAXIPYE 475
               +PV L  + Y+
Sbjct: 143 TENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  112 bits (269), Expect = 7e-26
 Identities = 56/92 (60%), Positives = 65/92 (70%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRSASISV 284
           TG VYNVT  ++GV++ K V G  Y    ++V
Sbjct: 61  TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNV 91



 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
           R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAPP  AH VS
Sbjct: 83  RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVS 142

Query: 434 -GTEKPVLLAXIPYE 475
               +PV L  + Y+
Sbjct: 143 TENNEPVTLHPVAYD 157


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = -1

Query: 448 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 284
           GF S+T    SF+G W+ L +  + G L G LQ  +     +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 283 TDIDALRYNPPR 248
               ++RY+  R
Sbjct: 504 RAFGSIRYSGGR 515


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 121 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 5
           S  L+ F+ +   IVPC+  +  +  ++P R   EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 80  YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 184
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 230 DCQQACSRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
           +C + CS  + P    I     +  K   DF KR  E +R+ +E   A KTV L  Q
Sbjct: 157 ECIRLCSL-VHPNDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,625
Number of Sequences: 5004
Number of extensions: 56722
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)