Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30267.Seq
(835 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 138 4e-33
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 3.5
SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10) 29 4.6
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_10084| Best HMM Match : Cadherin (HMM E-Value=2.4e-06) 29 6.1
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 29 6.1
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 8.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026) 28 8.1
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 138 bits (335), Expect = 4e-33
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 189 TGRVYNVTAHALGVIVNKRVRG 254
TGRVYNVT ALGV+VNK+V+G
Sbjct: 483 TGRVYNVTKRALGVVVNKQVKG 504
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = -2
Query: 798 LPNSPXXXGXPKLXGXKGXXPGGG-PXXPX*XPPSFXQKRGXCSPXKGXLSWXNPPRVFP 622
LP P G P+ G GGG P P PP RG P G PPR FP
Sbjct: 427 LPPPPQHTGPPQPRPPHGMPQGGGPPQLPPNLPPPPGGMRGMPPPPMGMYP---PPRGFP 483
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 266 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 382
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10)
Length = 314
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +3
Query: 165 PHKVYHGKTGRV------YNVTAHALGVIVNKRVRGGLYRSASI 278
P KV K GRV YN+T G++ ++RG +Y + S+
Sbjct: 204 PEKVLETKFGRVEYQYLEYNITTQLAGIVNGSKLRGEMYINESL 247
>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 23 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 23 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 23 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 23 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_10084| Best HMM Match : Cadherin (HMM E-Value=2.4e-06)
Length = 106
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 210 TAHALGVIVNKRVRGGLYRSASISVLSMSSTPS 308
T H+ V+V RGGL++ +ISV +S PS
Sbjct: 72 TKHSFNVVVRATDRGGLFKEMTISV-HLSGCPS 103
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = +3
Query: 171 KVYHGKTGRVYNVT-AHALGVIVNKRVR-GGLYRSASISVLSMSSTPSADKTSLRESKRM 344
++ HG + +V AH + + R R GL + + + SSTPS++K S K
Sbjct: 1891 RIPHGHSDDAADVAVAHCIANVQGPRTRTSGLNAAGTCHLQRRSSTPSSNKDSFEYKKHK 1950
Query: 345 RGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLS 467
R R+ + P K + S ++ ++ RL+
Sbjct: 1951 EKSIRSSRITVASRKQDHFERPDKPLSISEDVNTTAFKRLN 1991
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 206 RDCSCSRCDCQQACSRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 352
RDC+CS+C +R+ R+ I + K ++ R+ + +R EN RL
Sbjct: 44 RDCTCSKCQLITE-RQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 266 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 445
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +2
Query: 266 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 445
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 446 PVLLAXIPYEF 478
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
Length = 528
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 182 WKDRSRVQRDCSCSRCDCQQACSR--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 355
WK++ ++ + C Q+ + +P + + ++ ++ SKC Q+ L KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,908,849
Number of Sequences: 59808
Number of extensions: 475975
Number of successful extensions: 1288
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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