Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30266.Seq
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 66  GFKMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
           G K     K+P++A++L++   R+K+  +    +   I +  G  W ++
Sbjct: 472 GEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHAL 520


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 66  GFKMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
           G K     K+P++A++L++   R+K+  +    +   I +  G  W ++
Sbjct: 364 GEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHAL 412


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 245  KSQKQYIVDLESFNANGGGPV 307
            K+  QY V +++FN  G GP+
Sbjct: 1067 KTYTQYSVVVQAFNKVGAGPL 1087


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 587 TFYYELSNKKVYYLNLSNKSQK 522
           +FY E ++   Y+L +SN + K
Sbjct: 86  SFYLEATDDFAYFLEVSNNNFK 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,625
Number of Sequences: 336
Number of extensions: 3088
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)