Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30266.Seq
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 47 1e-05
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 45 8e-05
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 43 3e-04
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 41 0.001
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 39 0.004
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 39 0.005
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 36 0.036
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 35 0.084
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 29 4.2
04_03_0070 + 10677677-10679989 29 5.5
04_01_0239 - 3126367-3127230,3127342-3128247 29 5.5
01_02_0078 - 10894871-10895841,10897268-10898426 29 5.5
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K + PKR M+ ++ + + R +K++NP L TEIAKK GE+W+ M
Sbjct: 594 KDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K + PKR ++ ++ + + R+ +K+ NP L TEIAKK GE W+ M
Sbjct: 553 KDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD 218
K +KPKRP SA+ +++ R K+ +P +K V+ I K G+ W+SM D
Sbjct: 30 KDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDK 221
K KRP +A+ L+++ R + K ++P K V+ +AK+ GE W+SM D+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDK 221
KPKRP SA+ ++++ R + + +P K V ++K AGE WR+M ++
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 84 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 212
+PK+P +A+ ++ R K++NP +K + E+ K GE W +M
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDK 221
KPKR ++ + +L R + + +P K V + K AGE WR+M D+
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDE 70
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 34.7 bits (76), Expect = 0.084
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K KPK+PMSAY ++ R+ + + V EI + GE W++M
Sbjct: 280 KDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAM 324
Score = 33.9 bits (74), Expect = 0.15
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K+P AY+LW ++IK ++P E++ G W+++
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
Score = 33.1 bits (72), Expect = 0.26
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
++PK+P S++LL+ AR ++ ++ PG+ + + W+ +
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKEL 455
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 323 FSFFSLRDRRHLH*MILNLQCIVFGFCRLFFPFA 222
F +LRD + H ++NL C + GF RL FA
Sbjct: 408 FKSKALRDLENKHHWMVNLSCQIHGFTRLVRDFA 441
>04_03_0070 + 10677677-10679989
Length = 770
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 323 FSFFSLRDRRHLH*MILNLQCIVFGFCRL 237
F +LRD H H +LNL C V G RL
Sbjct: 372 FGSKALRDLEHKHPWMLNLACQVHGLSRL 400
>04_01_0239 - 3126367-3127230,3127342-3128247
Length = 589
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 292 WRRSRREKKENPKTREESETGAKNKESETGRR 387
W R+ K N + S KNK ETGRR
Sbjct: 156 WERAEAMKLANLENMRSSVKAEKNKRKETGRR 187
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/28 (46%), Positives = 22/28 (78%), Gaps = 3/28 (10%)
Frame = +1
Query: 286 CKWRRSRREKK-ENPKTR--EESETGAK 360
C+WRR+RRE++ N K R EE+++G++
Sbjct: 680 CRWRRNRREREGGNKKERGWEEADSGSQ 707
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,385
Number of Sequences: 37544
Number of extensions: 261119
Number of successful extensions: 637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -