Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30266.Seq
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 47 2e-05
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 47 2e-05
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 46 3e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 46 4e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 45 5e-05
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 43 3e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 36 0.025
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 36 0.025
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 36 0.025
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 36 0.025
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 36 0.025
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 36 0.043
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 36 0.043
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 36 0.043
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 36 0.043
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 33 0.23
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 32 0.53
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 32 0.53
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 31 1.2
U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical pr... 29 2.8
U80444-11|AAB37793.2| 304|Caenorhabditis elegans Hypothetical p... 29 5.0
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF024503-8|AAG24090.2| 283|Caenorhabditis elegans Hypothetical ... 28 8.7
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKS 224
K + PKR MSA+ W+ R +IK PG+ V ++AK AG W + DKS
Sbjct: 23 KDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKS 71
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKS 224
K + PKR MSA+ W+ R +IK PG+ V ++AK AG W + DKS
Sbjct: 23 KDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKS 71
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K ++PKR +AY++W N+ R+ +K+D G + ++AKKAG W+SM
Sbjct: 556 KDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSM 600
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
D KRPM+A+++W R K+ DNP + +EI+K+ G W+ + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +3
Query: 66 GFKMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
G K D+ KRPM+A+++W R K+ +NP + +EI+K+ G W+ + ++
Sbjct: 53 GKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
K ++ KRPM+A+++W R KI + P + EI+K+ G WRS+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K + PKR SAY+ W ++R+++K+D G V ++AKK G W++M
Sbjct: 551 KDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTM 595
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 179 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 219
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 176 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 216
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 282 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 322
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 370
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 370
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 35.5 bits (78), Expect = 0.043
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 87 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR 206
PKR +SA+ + R +I+ +P KV ++A++ G++W+
Sbjct: 134 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 173
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 138 KIKDDNPGLKVTEIAKKAGEIWRSMYD 218
K K N ++VTEI+KK E W++M D
Sbjct: 63 KKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 35.5 bits (78), Expect = 0.043
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 87 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR 206
PKR +SA+ + R +I+ +P KV ++A++ G++W+
Sbjct: 133 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 172
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 138 KIKDDNPGLKVTEIAKKAGEIWRSMYD 218
K K N ++VTEI+KK E W++M D
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.043
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 87 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR 206
PKR +SA+ + R +I+ +P KV ++A++ G++W+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 138 KIKDDNPGLKVTEIAKKAGEIWRSMYD 218
K K N ++VTEI+KK E W++M D
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.043
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 87 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR 206
PKR +SA+ + R +I+ +P KV ++A++ G++W+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 138 KIKDDNPGLKVTEIAKKAGEIWRSMYD 218
K K N ++VTEI+KK E W++M D
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVD 90
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 87 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD 218
P+RP+ Y+ + K++ +NP ++ +I K G+ W + D
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPD 69
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 75 MTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
MT K + S Y+L+ R +I +NP E++K G W+ + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 75 MTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
MT K + S Y+L+ R +I +NP E++K G W+ + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 75 MTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
MT K + S Y+L+ R +I +NP E++K G W+ + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 208 PCMTKANGKKRRQKPKTIHCRFRI-I*CKWRRSRREKKENPKTREESETGAKNKESETGR 384
P + GK++RQ PKT + K + S +E++E P EES G K + R
Sbjct: 405 PSTPEELGKRKRQAPKTDDFYWSAQSRTKLKGSSKEREETPAFDEESPIGGDEKRQQKAR 464
>U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical
protein F42A9.7 protein.
Length = 267
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 295 RRSRREKKENPKTREESETGAKNKESETGRRGR 393
+ SRR ++ N ++R+ S +G ++ S++GR +
Sbjct: 42 KSSRRSRRRNGRSRKSSRSGKSSRSSKSGRSSK 74
>U80444-11|AAB37793.2| 304|Caenorhabditis elegans Hypothetical
protein F26B1.1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 220 KANGKKRRQKPKTIHCRFRII*CKWRRSRREKKENPKTREESETGAKNKESETGRR 387
K KKR++ K C I K +++R +KKE K++++ E + S++ ++
Sbjct: 49 KKESKKRKKTQKEEDCDSESIKQKKKKARVKKKEVRKSKKDVEDDEDDSNSKSAKK 104
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 295 RRSRREKKENPKTREESETGAKNKESETGRR 387
R RE++E + ++E G + +ESE RR
Sbjct: 438 RNREREREERERENRDNERGRRERESEAPRR 468
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 295 RRSRREKKENPKTREESETGAKNKESETGRR 387
R RE++E + ++E G + +ESE RR
Sbjct: 438 RNREREREERERENRDNERGRRERESEAPRR 468
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 295 RRSRREKKENPKTREESETGAKNKESETGRR 387
R RE++E + ++E G + +ESE RR
Sbjct: 432 RNREREREERERENRDNERGRRERESEAPRR 462
>AF024503-8|AAG24090.2| 283|Caenorhabditis elegans Hypothetical
protein F31F4.11 protein.
Length = 283
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 626 IKEXXYRKYSLESTFYYELSNKKVYYLNLSNKSQKEKKTSFHGPEFKMINS 474
+KE ++K + L + YL+L N S+K +K G +FK + +
Sbjct: 124 LKETKFQKVCCVYENPWNLKRSQHEYLHLKNYSKKNQKIVLFGDDFKFMRN 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,257,787
Number of Sequences: 27780
Number of extensions: 261147
Number of successful extensions: 738
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -