Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30266.Seq
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   1.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   7.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.8  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 114 LWLNSARSKIKDDNPGLKV 170
           +W  + R+K K  NPGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 621 LNLLIPF*KVYFVIFIKGIIFNEI 692
           L L++P    Y VIF+ G + N I
Sbjct: 30  LTLIVPITLTYVVIFVTGFVGNII 53


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 680 NNTFNKNYKVNFLKWY 633
           NN +N NY  N+ K Y
Sbjct: 102 NNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 680 NNTFNKNYKVNFLKWY 633
           NN +N NY  N+ K Y
Sbjct: 102 NNNYNNNYNNNYKKLY 117


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 621 LNLLIPF*KVYFVIFIKGIIFN 686
           + ++IP   +Y +IF+ GI  N
Sbjct: 37  MRMVIPLTIIYMIIFVTGIFGN 58


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 245  KSQKQYIVDLESFNANGGGPV 307
            K+  QY V +++FN  G GP+
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPM 1068


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 692 NFIKNNTFNKNYKVNFLKWY 633
           N   NN +N NY  N  K Y
Sbjct: 336 NNYNNNNYNNNYNNNCKKLY 355


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 267  TMYCFWLLPPFLPIRF 220
            T + FW  PPF+P  F
Sbjct: 1159 TPFNFWNPPPFMPSPF 1174


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 576 IIKCAFKGVFSIXXFLNLL 632
           +I  AF G+FS+  FL L+
Sbjct: 57  VIVLAFSGLFSVFSFLILV 75


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 623 KEXXYRKYSLESTFYYELSNKKVYYLN 543
           K   Y  Y+  +   Y   NKK+YY N
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLYYKN 349


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 618 FLNLLIPF*KVYFVIF 665
           FL+LLIP   +YF+ F
Sbjct: 15  FLSLLIPALILYFIYF 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,697
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)