Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30264.Seq
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 46   3e-05
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        28   9.5  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
 Frame = +2

Query: 257 EPESD---VELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQ--- 418
           +PES+    ++D  GVI PD  DE   MGD +                            
Sbjct: 3   KPESEKGVFDIDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTL 61

Query: 419 -KYDEAINLYTAAIQLNPQSALLFAKRGQVY*N*TNQMHVLKTAHMP*S*TVTARA*QIP 595
              +EAI L+T AI  NP SA LFAKR   +         ++           +      
Sbjct: 62  GNLEEAIKLFTDAIMKNPHSAPLFAKRASCFIRMKKPNAAIRDCDKAAQINPDSAQIYKW 121

Query: 596 RGEL*A-LG*I*RSSHDLCESXKIDYDDPTNEWLNEV 703
           RG     LG   ++  DL ++ K+D+D+  NEW  +V
Sbjct: 122 RGRAHEFLGHWEKADKDLAQALKLDFDEQVNEWFKDV 158



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +1

Query: 508 LKLNKPNACIKDCTHALELNCDSACLTNSEGRA---IGSW 618
           +++ KPNA I+DC  A ++N DSA +    GRA   +G W
Sbjct: 93  IRMKKPNAAIRDCDKAAQINPDSAQIYKWRGRAHEFLGHW 132


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQV 505
           AF +QKY+EA+ LYT A+  +  +   +  R Q+
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNRAQL 163


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKR 496
           A S+  + +A+ LY+ AI+L+P + +L+  R
Sbjct: 32  ACSKGDFQKAVELYSEAIKLDPNNHVLYGNR 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,462,701
Number of Sequences: 59808
Number of extensions: 397826
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)