Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30264.Seq
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    58   5e-09

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 1/144 (0%)
 Frame = +2

Query: 275 ELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAA 454
           ++D EGVI P++   +  MGD                   A  AFS   +D A+  +TAA
Sbjct: 83  KIDNEGVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAA 141

Query: 455 IQLNPQSALLFAKRGQVY*N*TNQMHVLKTAHMP*S*TVTARA*QIPRGEL-*ALG*I*R 631
           I+ NP SA+L AKR  V       +  +       S    +      RG     LG    
Sbjct: 142 IEANPGSAMLHAKRANVLLKLKRPVAAIADCDKAISINPDSAQGYKFRGRANRLLGKWVE 201

Query: 632 SSHDLCESXKIDYDDPTNEWLNEV 703
           +  DL  + K+DYD+  NEWL EV
Sbjct: 202 AKTDLATACKLDYDEAANEWLKEV 225



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 164
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 505 VLKLNKPNACIKDCTHALELNCDSACLTNSEGRA---IGSWVNLK 630
           +LKL +P A I DC  A+ +N DSA      GRA   +G WV  K
Sbjct: 159 LLKLKRPVAAIADCDKAISINPDSAQGYKFRGRANRLLGKWVEAK 203


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 1/144 (0%)
 Frame = +2

Query: 275 ELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAA 454
           ++D EGVI P++   +  MGD                   A  AFS   +D A+  +TAA
Sbjct: 83  KIDNEGVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAA 141

Query: 455 IQLNPQSALLFAKRGQVY*N*TNQMHVLKTAHMP*S*TVTARA*QIPRGEL-*ALG*I*R 631
           I+ NP SA+L AKR  V       +  +       S    +      RG     LG    
Sbjct: 142 IEANPGSAMLHAKRANVLLKLKRPVAAIADCDKAISINPDSAQGYKFRGRANRLLGKWVE 201

Query: 632 SSHDLCESXKIDYDDPTNEWLNEV 703
           +  DL  + K+DYD+  NEWL EV
Sbjct: 202 AKTDLATACKLDYDEAANEWLKEV 225



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 164
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 505 VLKLNKPNACIKDCTHALELNCDSACLTNSEGRA---IGSWVNLK 630
           +LKL +P A I DC  A+ +N DSA      GRA   +G WV  K
Sbjct: 159 LLKLKRPVAAIADCDKAISINPDSAQGYKFRGRANRLLGKWVEAK 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,799
Number of Sequences: 27780
Number of extensions: 305673
Number of successful extensions: 772
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)