Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30263.Seq
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   2.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   3.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   5.2  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    26   5.2  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   6.8  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   9.0  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 182  KLAIEDKEKRIKFLEAALLKT-QTDLSKLQSRTATIEKIS 66
            KLA ++KEK +K+L+++   + +  L+KL     T E++S
Sbjct: 1075 KLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKETNERLS 1114


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 167 DKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNENVLD 6
           D E  +K     L K   DL K+Q    ++EK+    +  I+EI    N N ++
Sbjct: 328 DLESLLKSRRELLEKLTGDLGKIQGEIESLEKLKVKKSTMINEIVHRYNINEIN 381


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/68 (22%), Positives = 40/68 (58%)
 Frame = -1

Query: 206 ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPES 27
           + + +  ++  +++KE+ ++  +AA+ ++   LSKLQ     I++    ++ +I E+ +S
Sbjct: 615 LKSTENRYRQLLQEKEEELEIQKAAVDESLLQLSKLQLDRNDIDQA---MDTQIDELLKS 671

Query: 26  RNENVLDL 3
           + E + D+
Sbjct: 672 QLEKLDDI 679


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +1

Query: 454 HFLYITLF*VGA*AATMNKTNEELEYPAELESQFILKLPEHPAKILRGLLKSGG 615
           H LYI++    A  + MN T   +E P ELES+F+ +  +H    L+G    GG
Sbjct: 309 HDLYISVVEPAA-RSRMNVTFR-IE-PQELESEFLAEAEKHHLVQLKGYRSVGG 359


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 402 LNK*FFCIYLFTQFVIWTFSVHHLVLSRCIGSDN 503
           LN+ FF ++    FVI   SV HL+     GS N
Sbjct: 176 LNR-FFSLHYLMPFVIAALSVMHLIALHTNGSSN 208


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/32 (31%), Positives = 23/32 (71%)
 Frame = +3

Query: 342 VIMYQSISVNNNMIYQVVVALNK*FFCIYLFT 437
           +I+Y S+S++NN +   +++L +  F +++FT
Sbjct: 8   LILYISLSIDNNYLVTTLISLKENVF-LHIFT 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,032
Number of Sequences: 5004
Number of extensions: 52061
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)