Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30263.Seq
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    25   0.77 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 727 KGPFIFXPGHPPN 689
           +GP +F PG PPN
Sbjct: 46  RGPVLFPPGPPPN 58


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 80  IEKISRDLNIEIHEIPES 27
           I+K ++D+N+EI   P+S
Sbjct: 461 IDKETKDMNLEISTRPKS 478


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 703 GHPPNGPQGVP 671
           G PP GP G P
Sbjct: 45  GPPPGGPPGAP 55


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 697 PPNGPQGVPS 668
           PP GP GVP+
Sbjct: 398 PPRGPGGVPT 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,098
Number of Sequences: 438
Number of extensions: 3744
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)