Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30262.Seq
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   107   2e-24
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   107   2e-24
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.2  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   9.2  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  107 bits (257), Expect = 2e-24
 Identities = 50/74 (67%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EA
Sbjct: 57  RSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEA 116

Query: 421 RRKHLGGKILGFFF 462
           R K  GGKILGFF+
Sbjct: 117 RAKDAGGKILGFFY 130



 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 43/62 (69%), Positives = 53/62 (85%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+G+
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 257 LL 262
           ++
Sbjct: 61  IV 62


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  107 bits (257), Expect = 2e-24
 Identities = 50/74 (67%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EA
Sbjct: 57  RSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEA 116

Query: 421 RRKHLGGKILGFFF 462
           R K  GGKILGFF+
Sbjct: 117 RAKDAGGKILGFFY 130



 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 43/62 (69%), Positives = 53/62 (85%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+G+
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 257 LL 262
           ++
Sbjct: 61  IV 62


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 302 EMTPHLFSLPVRFTTICQLCDHQ 234
           +  P   SLP   T +C++CDH+
Sbjct: 168 QTVPSTDSLPPFETVLCRVCDHE 190


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 356 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 445
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,486
Number of Sequences: 5004
Number of extensions: 50316
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)