Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30262.Seq
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             76   4e-14
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 208
           MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +1

Query: 289 CGVISPRFDVPINDIERW-TNLLPSRQF 369
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/40 (47%), Positives = 19/40 (47%)
 Frame = -2

Query: 648 GNFTPRR*SWXTPXGFFPVTDVCKPXAXEIVNTXHYRXNW 529
           G    RR SW TP   FP  DV K       NT HYR NW
Sbjct: 44  GGCAARRLSWVTPG--FPSHDVVKRRPVNC-NTTHYRANW 80


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 110 KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 235
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,453,509
Number of Sequences: 59808
Number of extensions: 401834
Number of successful extensions: 1279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)