Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30262.Seq
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   122   4e-28
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   122   4e-28
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   122   4e-28
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   120   1e-27
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         116   2e-26
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    80   1e-15
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          79   3e-15
At1g18390.1 68414.m02297 protein kinase family protein contains ...    28   6.0  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  122 bits (293), Expect = 4e-28
 Identities = 56/74 (75%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEA
Sbjct: 57  RSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEA 116

Query: 421 RRKHLGGKILGFFF 462
           RRK++GGK+LGFF+
Sbjct: 117 RRKNVGGKVLGFFY 130



 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/62 (75%), Positives = 58/62 (93%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+G+
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 257 LL 262
           ++
Sbjct: 61  IV 62


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  122 bits (293), Expect = 4e-28
 Identities = 56/74 (75%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEA
Sbjct: 57  RSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEA 116

Query: 421 RRKHLGGKILGFFF 462
           RRK++GGK+LGFF+
Sbjct: 117 RRKNVGGKVLGFFY 130



 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/62 (75%), Positives = 58/62 (93%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+G+
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 257 LL 262
           ++
Sbjct: 61  IV 62


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  122 bits (293), Expect = 4e-28
 Identities = 56/74 (75%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEA
Sbjct: 57  RSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEA 116

Query: 421 RRKHLGGKILGFFF 462
           RRK++GGK+LGFF+
Sbjct: 117 RRKNVGGKVLGFFY 130



 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/62 (75%), Positives = 58/62 (93%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+G+
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 257 LL 262
           ++
Sbjct: 61  IV 62


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  120 bits (289), Expect = 1e-27
 Identities = 55/74 (74%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEA
Sbjct: 57  RSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEA 116

Query: 421 RRKHLGGKILGFFF 462
           RRK++GGK+LGFF+
Sbjct: 117 RRKNVGGKVLGFFY 130



 Score =  104 bits (249), Expect = 8e-23
 Identities = 46/62 (74%), Positives = 57/62 (91%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+G+
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 257 LL 262
           ++
Sbjct: 61  IV 62


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  116 bits (279), Expect = 2e-26
 Identities = 52/74 (70%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IVV L GRLN CGVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEA
Sbjct: 63  RSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEA 122

Query: 421 RRKHLGGKILGFFF 462
           R+K++GGK+LGFF+
Sbjct: 123 RKKNVGGKVLGFFY 136



 Score =  100 bits (240), Expect = 9e-22
 Identities = 45/62 (72%), Positives = 55/62 (88%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+G+
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 257 LL 262
           ++
Sbjct: 67  IV 68


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/71 (49%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
 Frame = +1

Query: 253 QIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRK 429
           +I V+L GR+N C  ++ R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++
Sbjct: 59  RITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKR 118

Query: 430 HLGGKILGFFF 462
           ++GG++LGFF+
Sbjct: 119 NVGGQVLGFFY 129



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 27/56 (48%), Positives = 40/56 (71%)
 Frame = +2

Query: 92  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGRL 259
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR GR+
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 35/70 (50%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
 Frame = +1

Query: 253 QIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRK 429
           +I V+L GR+N C  ++ R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++
Sbjct: 59  RITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKR 118

Query: 430 HLGGKILGFF 459
           ++GG++LGFF
Sbjct: 119 NVGGQVLGFF 128



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +2

Query: 92  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGRL 259
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR GR+
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 155 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGRLL 262
           +RPC   +   LT +  +G+  E ++VD +++G L+
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,854
Number of Sequences: 28952
Number of extensions: 287457
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)