Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30259.Seq
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 115 2e-26
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 115 2e-26
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 113 5e-26
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 113 5e-26
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 36 0.022
At1g54926.1 68414.m06272 hypothetical protein 31 0.64
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 29 1.9
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 1.9
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 3.4
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 3.4
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 3.4
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 28 4.5
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 4.5
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 5.9
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 5.9
At1g04680.1 68414.m00465 pectate lyase family protein similar to... 27 5.9
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 7.9
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.9
At1g76990.3 68414.m08966 ACT domain containing protein low simil... 27 7.9
At1g76990.2 68414.m08965 ACT domain containing protein low simil... 27 7.9
At1g76990.1 68414.m08964 ACT domain containing protein low simil... 27 7.9
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 115 bits (277), Expect = 2e-26
Identities = 55/111 (49%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 74.1 bits (174), Expect = 5e-14
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 434 GTEKPVLLAPIPYEFV 481
G + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 115 bits (277), Expect = 2e-26
Identities = 55/111 (49%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 74.1 bits (174), Expect = 5e-14
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 434 GTEKPVLLAPIPYEFV 481
G + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 113 bits (273), Expect = 5e-26
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 74.9 bits (176), Expect = 3e-14
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 434 GTEKPVLLAPIPYEFV 481
G + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 113 bits (273), Expect = 5e-26
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 74.9 bits (176), Expect = 3e-14
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 434 GTEKPVLLAPIPYEFV 481
G + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 35.5 bits (78), Expect = 0.022
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 159 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGGLYRSASISVLSMSSTPSADKTSLRESK 338
G P K Y+G GR+ AHAL NK L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 339 RMRGY 353
GY
Sbjct: 240 GKNGY 244
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 227 CDCQQACSRRIIPKRINIRVEHVKHSK 307
CD + C R+ PK +I +H KH K
Sbjct: 59 CDLSEGCKNRMTPKAFHIISQHPKHHK 85
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -3
Query: 242 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERN 81
L N S V + + FVW LLN SDV+ V +H R ERN
Sbjct: 346 LTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 134 DVYNVSNFVHFHVRGERNSSM 72
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 146 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 238
C +GY+ ++ KDR R+ D C+ D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 269 RINIRVEHVKHSKCRQDFLKRVKENERL 352
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 288 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 452
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 188 DRSRVQR-DC-SCSR-CDCQQACSRRIIPKRINIRVEHVKH 301
DRS V R C SCS+ C C ++C R K I++ +H
Sbjct: 295 DRSCVCRVQCISCSKGCSCPESCGNRPFRKEKKIKIVKTEH 335
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 108 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 239
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 68 HTWNYSALHVHESVQSWRHCRHQRQWCS 151
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 388
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At1g04680.1 68414.m00465 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 431
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 185 SMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNS-SMCAEPASEQVPGAAAVTLGVRH 9
S +F W T+ +D +S F HV + NS S CA+ + V G+ A+T+ H
Sbjct: 216 SETHFGWRTM------ADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNH 269
Query: 8 L 6
L
Sbjct: 270 L 270
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 7.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 113 SWRHCRHQRQWCSS 154
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 27.1 bits (57), Expect = 7.9
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = -3
Query: 242 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAE 63
L N S V A + + F W +LN SDV+ V ++ R ERN A
Sbjct: 351 LTHNGWSSTVESVCEAVPMICLPFRWDQMLNARFVSDVWMVG--INLEDRVERNEIEGAI 408
Query: 62 PASEQVPGAAAVTLGVRHLR 3
P A+ + HL+
Sbjct: 409 RRLLVEPEGEAIRERIEHLK 428
>At1g76990.3 68414.m08966 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 146 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 238
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.2 68414.m08965 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 146 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 238
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.1 68414.m08964 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 146 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 238
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,078
Number of Sequences: 28952
Number of extensions: 233864
Number of successful extensions: 796
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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