Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30258.Seq
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    77   3e-15
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    34   0.023
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    31   0.13 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.51 
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   6.2  

>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 33/68 (48%), Positives = 45/68 (66%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQX 434
           H+KC+ F+RPT   + LL  ELRDPKY  Y +YF+NV+ K+ ++ LA  D  EAV+ +Q 
Sbjct: 63  HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLAESDDFEAVKSIQE 122

Query: 435 VFQDNLTV 458
            F D L V
Sbjct: 123 FFLDYLVV 130



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/51 (31%), Positives = 33/51 (64%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYL 213
           M+++ A + Y  K        +K++L++++TT IVS   +QS +L++++YL
Sbjct: 1   MDLVSASQSYF-KRIFQEVSDLKILLLEEDTTKIVSSCITQSNLLEQQIYL 50


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLA 395
           I F++PT ENI L+  +L    Y   ++ FS+ +S+A ++  A
Sbjct: 92  IYFVQPTQENIELIIEDLSKGLYESAYVCFSSTISRALLEQFA 134


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +3

Query: 414 AVRXVQXVFQDNLTVTVESLGRAVSDSTQAKTPMXSKLIGADAGF 548
           A+R       D L+ +V+SLG+  S    AKT M SK+IG D+ F
Sbjct: 129 AIREAVKFMTDVLSCSVDSLGKE-SLINVAKTSMSSKIIGNDSDF 172


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 280 RIKTMHFMCSCYPIWHDCLSSRISKLPSVRFP 185
           R++ +H + SC+P  HD  S +  K P   FP
Sbjct: 430 RLELLHDVLSCFPKKHDSTSRKKPKFPYQYFP 461


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 213 IREDRQSCQMG*HEHMKCIVFIRPTSENIALLSRELRDPKYG 338
           IR D   C     EH    +   P +E  A+L+ +L +PK G
Sbjct: 122 IRSDLLKCMS---EHPDKSLICHPLAEKFAILASKLHNPKVG 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,798
Number of Sequences: 5004
Number of extensions: 53449
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)