Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30258.Seq
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    59   4e-09
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    30   2.1  
01_01_0646 + 4904790-4904996,4905437-4905483,4905623-4905662,490...    29   2.8  
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125...    29   4.9  
09_02_0249 + 6240237-6240287,6241489-6241764                           28   8.6  
03_04_0084 - 17153428-17153502,17154158-17154433                       28   8.6  

>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 25/64 (39%), Positives = 39/64 (60%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQX 434
           H+K + F+RP+S+N+  L R L  P++  Y ++FSNV+    I+ LA  D  E V+ VQ 
Sbjct: 66  HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125

Query: 435 VFQD 446
            + D
Sbjct: 126 FYAD 129



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/57 (45%), Positives = 42/57 (73%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           M +I  ++ YI +M     PGMKV+++D +T  +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1   MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSK 374
           M  I FI+PT ENI +   ++  + P Y   +++FS+ V +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQR 512


>01_01_0646 +
           4904790-4904996,4905437-4905483,4905623-4905662,
           4905770-4905970,4906260-4906472,4906561-4906629,
           4906711-4906840,4906934-4906974,4907063-4907287,
           4907575-4907745,4908713-4908778
          Length = 469

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 480 AVSDSTQAKTPMXSKLIGADAGFLLGD 560
           A S S  AK  M  KL+G DAG++L D
Sbjct: 31  APSTSMAAKWAMKKKLVGGDAGYVLED 57


>04_04_0729 +
           27612106-27612195,27612284-27612370,27612469-27612528,
           27612554-27612688,27612769-27612864,27613149-27613214,
           27613647-27613864,27614093-27614189,27614605-27614691,
           27614892-27615026,27615121-27615225,27615717-27615845,
           27615925-27616028,27616598-27616688,27616774-27616857
          Length = 527

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 414 AVRXVQXVFQDNLTVTVESLGRAVSDSTQAKTPMXSKLIGADAGF 548
           A+R      ++ L V V+ LG+  S    AKT M SKLI +D+ F
Sbjct: 109 AMREACKYVEEKLAVKVDKLGKD-SLINCAKTSMSSKLINSDSDF 152


>09_02_0249 + 6240237-6240287,6241489-6241764
          Length = 108

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 328 GSLSSRDNRAMFSDVGRIKTMHFMCSCYPIW 236
           G+ +SR N A   D+ R +T   MC+  P W
Sbjct: 42  GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72


>03_04_0084 - 17153428-17153502,17154158-17154433
          Length = 116

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 598 FIGXELPXQHLQPSPRRNPASAPISLDXMGVLACVESETALPSDST 461
           F G E P    +P+P   PA AP       V A  E  +   +D+T
Sbjct: 18  FGGNEAPKPAAKPAPAAAPAPAPAPAPAAAVAAPAEKPSPAKADAT 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,555,963
Number of Sequences: 37544
Number of extensions: 329849
Number of successful extensions: 601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)