Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30258.Seq
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)                     94   9e-20
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      29   5.0  
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)                29   5.0  
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)                 28   6.6  
SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                28   8.8  
SB_26644| Best HMM Match : Collagen (HMM E-Value=0)                    28   8.8  

>SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)
          Length = 176

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 44/57 (77%), Positives = 50/57 (87%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           MNVI AVK Y+TKM   SG GMKV+LMDKETT IVSMVYSQ+E+LQKEVYLFER+D+
Sbjct: 1   MNVILAVKQYVTKMIEESGAGMKVLLMDKETTGIVSMVYSQTEVLQKEVYLFERVDT 57


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 164 TMLVVSLSINITFIPGPLSSVILVMYIL--TACITFILIKLSLFIS 33
           T  + SLS ++TF+ GPL++ +   Y +   A +  IL  L LF S
Sbjct: 57  TAWIASLSFSLTFMLGPLTTSLCTKYGVRSVAVLGAILFALGLFCS 102


>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 180 TVHHTHYAGSFFIH*YHFHSRAAXXRHFSNVHFNCLY--HIHFD*IILI 40
           ++HH +    +F H Y++H +     H  + H +  Y  H H D  I+I
Sbjct: 79  SIHHRYR--DYFYHSYNYHHKWQHYHHHHHYHHHLDYDHHYHHDLFIII 125


>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
          Length = 341

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -1

Query: 334 YLGSLSSRDNRAM---FSDVGRIKTMHFMCSCYPIWHDCLSSRISKLPSVRFPID 179
           YL SL  R + ++   + + GR+ T+      +P + D ++  IS++P V  P+D
Sbjct: 207 YLRSLRKRQDMSVNTTWPNFGRVTTLVAQDMTFPSYDDVINDVISRVPFVDPPLD 261


>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
          Length = 863

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 149 SLSINITFIPGPLSSVILV--MYILTACITFILIKLSLFISQS 27
           +L++   F+P  + S+++V  +YIL  C T + + + L+I  S
Sbjct: 246 TLALLCVFLPPYVPSIMIVWWVYILAICTTMVALHMRLYIISS 288


>SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/77 (18%), Positives = 34/77 (44%)
 Frame = +1

Query: 25  ILCEINKDNLIKMNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKE 204
           ++CE+ KD+  K  +   V + + K       G ++      TT   + +  ++E+++  
Sbjct: 15  LICELGKDDFKKTGLPMCVAIKLQKAIESLDKGKELKTSLDSTTIKANKILKKTELIELS 74

Query: 205 VYLFERIDSHAKWDNMN 255
               E   +++ W+  N
Sbjct: 75  KKSLEAQFANSNWNEFN 91


>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 141 H*YHFHSRAAXXRHFSNVHFNCLYHIHFD*IILI 40
           H YH H       H+ +VH++  +H + D +I+I
Sbjct: 231 HHYHHHLCHDRRHHYHHVHYDHHHHHYHDIVIII 264


>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 877

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +3

Query: 579 GNSXPMNPRGNTXIPYPXXLNTSXKPTG-RSCQGK 680
           GN  P  P G   IP P   N    PTG R   GK
Sbjct: 766 GNPGPQGPTGTRGIPGPQGKNGKMGPTGPRGPSGK 800


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,755,273
Number of Sequences: 59808
Number of extensions: 397005
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)