Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30258.Seq
(721 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U35246-1|AAC50931.1| 570|Homo sapiens vacuolar protein sorting ... 97 4e-20
BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sortin... 97 4e-20
BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sortin... 97 4e-20
AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sortin... 97 4e-20
AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sortin... 97 4e-20
AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sortin... 97 4e-20
AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens ... 97 4e-20
AJ133421-1|CAB40417.1| 570|Homo sapiens vacuolar protein sortin... 97 4e-20
AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sortin... 97 4e-20
BC017734-1|AAH17734.1| 642|Homo sapiens sec1 family domain cont... 39 0.021
AK222820-1|BAD96540.1| 642|Homo sapiens vesicle transport-relat... 39 0.021
AF110646-1|AAD48586.1| 638|Homo sapiens vesicle transport-relat... 39 0.021
AF086916-1|AAP97146.1| 617|Homo sapiens sly1p protein. 39 0.021
AB020724-1|BAA74940.2| 648|Homo sapiens KIAA0917 protein protein. 39 0.021
>U35246-1|AAC50931.1| 570|Homo sapiens vacuolar protein sorting
homolog h-vps45 protein.
Length = 570
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 84.2 bits (199), Expect = 4e-16
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ L +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDSLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XVFQDNLTV 458
+ D + V
Sbjct: 124 EFYGDYIAV 132
>BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 83.0 bits (196), Expect = 1e-15
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XVFQDNLTV 458
+ D + V
Sbjct: 124 EFYGDYIAV 132
>BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 83.0 bits (196), Expect = 1e-15
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XVFQDNLTV 458
+ D + V
Sbjct: 124 EFYGDYIAV 132
>AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 316
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 80.6 bits (190), Expect = 5e-15
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XV 437
V
Sbjct: 124 QV 125
>AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 83.0 bits (196), Expect = 1e-15
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XVFQDNLTV 458
+ D + V
Sbjct: 124 EFYGDYIAV 132
>AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sorting
45A variant protein.
Length = 570
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 83.0 bits (196), Expect = 1e-15
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XVFQDNLTV 458
+ D + V
Sbjct: 124 EFYGDYIAV 132
>AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens
cDNA FLJ13108 fis, clone NT2RP3002529, weakly similar to
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS45. ).
Length = 570
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 83.0 bits (196), Expect = 1e-15
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XVFQDNLTV 458
+ D + V
Sbjct: 124 EFYGDYIAV 132
>AJ133421-1|CAB40417.1| 570|Homo sapiens vacuolar protein sorting
protein.
Length = 570
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 83.0 bits (196), Expect = 1e-15
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XVFQDNLTV 458
+ D + V
Sbjct: 124 EFYGDYIAV 132
>AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sorting
45 isoform protein.
Length = 570
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 83.0 bits (196), Expect = 1e-15
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LA D E V VQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 XVFQDNLTV 458
+ D + V
Sbjct: 124 EFYGDYIAV 132
>BC017734-1|AAH17734.1| 642|Homo sapiens sec1 family domain
containing 1 protein.
Length = 642
Score = 38.7 bits (86), Expect = 0.021
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCD-XXEAVRXVQXVFQ 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV V VF
Sbjct: 89 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 148
Query: 444 DNLT-VTVE 467
L +T+E
Sbjct: 149 QYLNFITLE 157
>AK222820-1|BAD96540.1| 642|Homo sapiens vesicle transport-related
protein isoform a variant protein.
Length = 642
Score = 38.7 bits (86), Expect = 0.021
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCD-XXEAVRXVQXVFQ 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV V VF
Sbjct: 89 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 148
Query: 444 DNLT-VTVE 467
L +T+E
Sbjct: 149 QYLNFITLE 157
>AF110646-1|AAD48586.1| 638|Homo sapiens vesicle transport-related
protein protein.
Length = 638
Score = 38.7 bits (86), Expect = 0.021
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCD-XXEAVRXVQXVFQ 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV V VF
Sbjct: 86 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 145
Query: 444 DNLT-VTVE 467
L +T+E
Sbjct: 146 QYLNFITLE 154
>AF086916-1|AAP97146.1| 617|Homo sapiens sly1p protein.
Length = 617
Score = 38.7 bits (86), Expect = 0.021
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCD-XXEAVRXVQXVFQ 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV V VF
Sbjct: 64 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 123
Query: 444 DNLT-VTVE 467
L +T+E
Sbjct: 124 QYLNFITLE 132
>AB020724-1|BAA74940.2| 648|Homo sapiens KIAA0917 protein protein.
Length = 648
Score = 38.7 bits (86), Expect = 0.021
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCD-XXEAVRXVQXVFQ 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV V VF
Sbjct: 95 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 154
Query: 444 DNLT-VTVE 467
L +T+E
Sbjct: 155 QYLNFITLE 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,218,686
Number of Sequences: 237096
Number of extensions: 1963740
Number of successful extensions: 2961
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2961
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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