Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30258.Seq
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    79   4e-15
U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical pr...    67   1e-11
Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical p...    33   0.27 
U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.        33   0.27 
Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine rece...    29   4.4  
Z31590-4|CAD27606.1|  495|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z31590-3|CAD27605.1|  607|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z31590-2|CAD27604.1|  538|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 31/69 (44%), Positives = 50/69 (72%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXVQ 431
           +++KC+VF+RPT +NI  L +EL++P++  Y++YF+N ++K D+K LA  D  E VR VQ
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETVREVQ 124

Query: 432 XVFQDNLTV 458
            VF D + +
Sbjct: 125 EVFLDGVPI 133



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 27/64 (42%), Positives = 45/64 (70%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM 252
            +N+
Sbjct: 61  SENI 64


>U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical
           protein C44C1.4b protein.
          Length = 132

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 25/59 (42%), Positives = 43/59 (72%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAXCDXXEAVRXV 428
           +++KC+VF+RPT +NI  L +EL++P++  Y++YF+N ++K D+K LA  D  E +  V
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETIPKV 123



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 27/64 (42%), Positives = 45/64 (70%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM 252
            +N+
Sbjct: 61  SENI 64


>Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical
           protein T05C12.7 protein.
          Length = 549

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 28/88 (31%), Positives = 41/88 (46%)
 Frame = +3

Query: 444 DNLTVTVESLGRAVSDSTQAKTPMXSKLIGADAGFLLGDGCRCCXGNSXPMNPRGNTXIP 623
           +N++ T +S+GR  S    AKT M SK+IG DA F  G+        +  +    N  + 
Sbjct: 138 ENISFTSDSIGRQ-SVVNAAKTSMSSKIIGPDADF-FGE---LVVDAAEAVRVENNGKVT 192

Query: 624 YPXXLNTSXKPTGRSCQGKXXLSKAMAL 707
           YP       K  G+S + +  L K  AL
Sbjct: 193 YPINAVNVLKAHGKSAR-ESVLVKGYAL 219


>U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.
          Length = 549

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 28/88 (31%), Positives = 41/88 (46%)
 Frame = +3

Query: 444 DNLTVTVESLGRAVSDSTQAKTPMXSKLIGADAGFLLGDGCRCCXGNSXPMNPRGNTXIP 623
           +N++ T +S+GR  S    AKT M SK+IG DA F  G+        +  +    N  + 
Sbjct: 138 ENISFTSDSIGRQ-SVVNAAKTSMSSKIIGPDADF-FGE---LVVDAAEAVRVENNGKVT 192

Query: 624 YPXXLNTSXKPTGRSCQGKXXLSKAMAL 707
           YP       K  G+S + +  L K  AL
Sbjct: 193 YPINAVNVLKAHGKSAR-ESVLVKGYAL 219


>Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical
           protein R09H10.2 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 394 AKVLMSALETTLLKYIK*TPYLGSLSSRDN-RAMFSDVGRIKTMHFMCSCYPIWHDCLSS 218
           A V  +AL  +LL YI       S+S+    R  FSD    K      S Y  WHDCL  
Sbjct: 6   ATVFFAALSISLLLYI-------SVSNTPTPRFNFSDSAVSKVW----SNYTAWHDCLMQ 54

Query: 217 RISKL 203
            ISKL
Sbjct: 55  NISKL 59


>U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 25 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 340 TPYLGSLSSRDNRAMFSDVGRIKTMHFMCSCYPIWH 233
           TPYL   +      +FS +  +    F C  YPIWH
Sbjct: 108 TPYLFGFNYFQFAKIFS-ISLLSANRFTCVAYPIWH 142


>Z31590-4|CAD27606.1|  495|Caenorhabditis elegans Hypothetical
           protein R01H10.3d protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 586 ELPXQHLQPSPR--RNPASAPISLDXMGVLACVESETALPSDS 464
           E P    QPSPR   +P   P+  D MG++   E+  + P+ S
Sbjct: 428 ERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASS 470


>Z31590-3|CAD27605.1|  607|Caenorhabditis elegans Hypothetical
           protein R01H10.3c protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 586 ELPXQHLQPSPR--RNPASAPISLDXMGVLACVESETALPSDS 464
           E P    QPSPR   +P   P+  D MG++   E+  + P+ S
Sbjct: 428 ERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASS 470


>Z31590-2|CAD27604.1|  538|Caenorhabditis elegans Hypothetical
           protein R01H10.3b protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 586 ELPXQHLQPSPR--RNPASAPISLDXMGVLACVESETALPSDS 464
           E P    QPSPR   +P   P+  D MG++   E+  + P+ S
Sbjct: 428 ERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASS 470


>Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical
           protein R01H10.3a protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 586 ELPXQHLQPSPR--RNPASAPISLDXMGVLACVESETALPSDS 464
           E P    QPSPR   +P   P+  D MG++   E+  + P+ S
Sbjct: 428 ERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASS 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,434,206
Number of Sequences: 27780
Number of extensions: 302276
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)