Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30256.Seq
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 96 4e-21
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 41 2e-04
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.40
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 1.6
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch... 26 4.9
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 4.9
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 25 6.4
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 8.5
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 95.9 bits (228), Expect = 4e-21
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +3
Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXEAVREVQE 434
H+KC+ F+RPT + LL ELRDPKY Y +YF+NV+ K+ ++ LAE D+ EAV+ +QE
Sbjct: 63 HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLAESDDFEAVKSIQE 122
Query: 435 VFADYLAVDRHLFSFNI 485
F DYL V+ L SFNI
Sbjct: 123 FFLDYLVVNNDLASFNI 139
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/51 (31%), Positives = 35/51 (68%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYL 213
M+++ A + Y ++ E +K++L++++TT IVS +QS +L++++YL
Sbjct: 1 MDLVSASQSYFKRIFQEVSD-LKILLLEEDTTKIVSSCITQSNLLEQQIYL 50
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAE----CDEXEAVREVQE 434
I F++PT ENI L+ +L Y ++ FS+ +S+A ++ AE + + +V +
Sbjct: 92 IYFVQPTQENIELIIEDLSKGLYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYD 151
Query: 435 VFADYLAVDRHLFSFNI 485
+ +Y+ ++ FS +
Sbjct: 152 QYLNYVVLESDFFSLQL 168
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 29.5 bits (63), Expect = 0.40
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 280 RIKTMHFMCSCYPIWHDCLSSRISKLPSVRFP 185
R++ +H + SC+P HD S + K P FP
Sbjct: 430 RLELLHDVLSCFPKKHDSTSRKKPKFPYQYFP 461
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 590 SERRLAASETGGAPADLEKLVGDAVGSNPTLEASNNIERE 471
S+RR++ S T EK+ S+PT AS+N+ E
Sbjct: 175 SQRRMSDSSTPSTTKSKEKIFSPKALSSPTQGASSNVTPE 214
>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = -2
Query: 590 SERRLAASETGGAPADLEKLVGDAVGSNPTLEASNNIEREQVSVHSQVVSKNFLDLSDSL 411
+ ++LAA+ET GAP E+ V + ++ + + +N SV + V + LSD L
Sbjct: 92 NNQQLAANETAGAPEGTEETVD--ISNSISDDHANAKNLPAASVKALVGAG---VLSDEL 146
Query: 410 XFITFGQSFD 381
I + SF+
Sbjct: 147 SVIAYDMSFE 156
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 213 IREDRQSCQMG*HEHMKCIVFIRPTSENIALLSRELRDPKYG 338
IR D C EH + P +E A+L+ +L +PK G
Sbjct: 122 IRSDLLKCMS---EHPDKSLICHPLAEKFAILASKLHNPKVG 160
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 105 GXERPWNESDING*RNYQHSEYGVQSIGNL 194
G E+ ESD+N + H YG+ + G +
Sbjct: 247 GLEKELTESDVNIDTRFAHPAYGIPNEGTI 276
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.0 bits (52), Expect = 8.5
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = -2
Query: 548 ADLEKLVGDAVGSNPTLEASNNIEREQVSVHSQVVSKNFLDLSDSLXFITFGQSFDVCLR 369
ADL+ + A +E N+ + SV ++++ L L + F SFDV R
Sbjct: 321 ADLQLIDKMANAPKHVVEFLENLSLKNSSVLKKILNNLALMKKKELN-LNFLPSFDVWDR 379
Query: 368 NYITEIYKVNTI 333
Y T YK + I
Sbjct: 380 EYYTARYKQSLI 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,302
Number of Sequences: 5004
Number of extensions: 48513
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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