Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30256.Seq
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838... 80 2e-15
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 36 0.033
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 29 2.8
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 29 2.8
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 29 2.8
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 29 2.8
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 29 3.7
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 29 3.7
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 29 3.7
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 28 5.0
09_02_0249 + 6240237-6240287,6241489-6241764 28 6.5
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028... 27 8.7
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128... 27 8.7
>02_03_0030 -
14083117-14083166,14083620-14083689,14083777-14083857,
14083940-14084065,14084916-14085143,14085246-14085325,
14086567-14086768,14086857-14086946
Length = 308
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/77 (42%), Positives = 53/77 (68%)
Frame = +3
Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXEAVREVQE 434
H+K + F+RP+S+N+ L R L P++ Y ++FSNV+ I+ LA+ DE E V++VQE
Sbjct: 66 HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125
Query: 435 VFADYLAVDRHLFSFNI 485
+AD+ A+D + F+ NI
Sbjct: 126 FYADFCAIDPYHFTLNI 142
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/57 (45%), Positives = 43/57 (75%)
Frame = +1
Query: 61 MNVIQAVKMYITKMTXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
M +I ++ YI +M + PGMKV+++D +T +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1 MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSKADIKTLAECDEXEA-VREV 428
M I FI+PT ENI + ++ + P Y +++FS+ V + + + + A + +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGAL 531
Query: 429 QEVFADYLAVDRHLFS 476
E+ +Y A+D F+
Sbjct: 532 SEMNLEYFAIDSQGFT 547
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 566 ETGGAPADLEKLVGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
ET GA + L G +VGS PTL+ ++ + V +HS ++S
Sbjct: 141 ETYGATEENIILYGQSVGSGPTLDLASRLPHLRAVVLHSPILS 183
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -2
Query: 572 ASETGGAPADLEKLVGDAVGSNPTLEASNNIEREQVSVHSQVVSKN--FLDLSDSL 411
A E A +L+G+A+ +NP A IE + H+ S N +LD D L
Sbjct: 351 AIEAKQGEAKSAQLIGEAINNNPAFLALRQIEAAREISHTMARSNNKVYLDSKDLL 406
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 560 GGAPADLEKLVGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
G P DL L G +VGS PTL ++ +E+ V +HS ++S
Sbjct: 138 GIEPEDLI-LYGQSVGSGPTLHLASRLEKLRGVVLHSAILS 177
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 566 ETGGAPADLEKLVGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
ET GA + L G +VGS PTL+ ++ + V +HS ++S
Sbjct: 155 ETYGASEENIILYGQSVGSGPTLDLASRLPHLRAVVLHSPILS 197
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +3
Query: 285 TSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEX---EAVREVQEVFADYLA 455
T ++ A+L R+ D +YG YFS + + E VRE+ + +D
Sbjct: 156 TLDSAAILFRDGFDEEYGNTINYFSKRKPPVPLSPPDPMELGFLRETVRELTSIMSDEWL 215
Query: 456 VDRHLFSFNIVGCLQGRVGTNSISNEF 536
+ L S L VG N +S F
Sbjct: 216 REAELSSEGTTSSLSPTVGANLVSESF 242
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 587 ERRLAASETGGAPADLEKLVGDAVGSNPTLEASNNIE--REQVSVHSQVVSKNFLDLSDS 414
++R A G E L+G A+ +NP A IE RE S +K FLD +D
Sbjct: 288 DKRSAIIRAQGEAKSAE-LIGQAIANNPAFLALRQIEAAREISHTMSSSANKVFLDSNDL 346
Query: 413 L 411
L
Sbjct: 347 L 347
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 536 KLVGDAVGSNPTLEASNNIEREQVSVHSQVVSKN--FLDLSDSL 411
+L+G+A+ +NP A IE + H+ S N +LD D L
Sbjct: 226 QLIGEAINNNPAFLALRQIEAAREISHTMASSNNKVYLDSKDLL 269
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 566 ETGGAPADLEKLVGDAVGSNPTLEASNNIER-EQVSVHSQVVS 441
E GA + L G +VGS PT++ ++ + R V +HS ++S
Sbjct: 121 ENFGAKEEEIILYGQSVGSGPTVDLASRLHRLRAVVLHSPILS 163
>09_02_0249 + 6240237-6240287,6241489-6241764
Length = 108
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 328 GSLSSRDNRAMFSDVGRIKTMHFMCSCYPIW 236
G+ +SR N A D+ R +T MC+ P W
Sbjct: 42 GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72
>07_03_0740 -
21102015-21102287,21102402-21102555,21102647-21102884,
21103008-21103218,21103303-21103442,21103537-21103665,
21104120-21104960
Length = 661
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 472 SLSILLDASKVGLEPTASPTSFSRSAGAPP 561
S+ ++LD+ V L+ + P F+R+ GA P
Sbjct: 621 SVVMMLDSETVSLQVPSKPAFFARNGGAKP 650
>03_05_0842 +
28110940-28111141,28111451-28111879,28112034-28112806,
28114046-28114237,28115116-28115277,28115395-28115861,
28116339-28116384,28116639-28116647
Length = 759
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 500 LEASNNIEREQVSVHSQVVSKNFLDLSDSLXFITFG 393
L+A N I E++ VHS + NFL + +L I FG
Sbjct: 535 LKAVNTIHEERI-VHSDLKPANFLLVRGALKLIDFG 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,434
Number of Sequences: 37544
Number of extensions: 292409
Number of successful extensions: 819
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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