Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30256.Seq
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)                     97   1e-20
SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)                      29   2.2  
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)                29   3.8  
SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)                  29   3.8  
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)                 28   5.1  
SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)                    28   5.1  
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      28   6.7  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   27   8.8  
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                27   8.8  

>SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)
          Length = 176

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 45/57 (78%), Positives = 51/57 (89%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMTXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           MNVI AVK Y+TKM  ESG GMKV+LMDKETT IVSMVYSQ+E+LQKEVYLFER+D+
Sbjct: 1   MNVILAVKQYVTKMIEESGAGMKVLLMDKETTGIVSMVYSQTEVLQKEVYLFERVDT 57



 Score = 49.2 bits (112), Expect(2) = 1e-07
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +3

Query: 375 ADIKTLAECDEXEAVREVQEVFADYLAVDRHLFSFN 482
           A I+ LAE D+ E VREVQE +ADY A+  H+FS N
Sbjct: 77  ASIRALAEADDQEVVREVQEYYADYFAISPHVFSLN 112



 Score = 24.2 bits (50), Expect(2) = 1e-07
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLS 311
           +H+K I F+RPT  +I  L+
Sbjct: 64  KHLKAICFLRPTPASIRALA 83


>SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)
          Length = 237

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 436 FLLTTWLWTDTCSLSILLDASKVGLEPTASPTS 534
           F L  WLWT T SL+   D  +VG +  A  +S
Sbjct: 15  FALYLWLWTSTASLTEAKDNLRVGCDTKAYRSS 47


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 164 TMLVVSLSINITFIPGPLSSVILVMYIL--TACITFILIKLSLFIS 33
           T  + SLS ++TF+ GPL++ +   Y +   A +  IL  L LF S
Sbjct: 57  TAWIASLSFSLTFMLGPLTTSLCTKYGVRSVAVLGAILFALGLFCS 102


>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
          Length = 341

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 334 YLGSLSSRDNRAM---FSDVGRIKTMHFMCSCYPIWHDCLSSRISKLPSVRFPID 179
           YL SL  R + ++   + + GR+ T+      +P + D ++  IS++P V  P+D
Sbjct: 207 YLRSLRKRQDMSVNTTWPNFGRVTTLVAQDMTFPSYDDVINDVISRVPFVDPPLD 261


>SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)
          Length = 455

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 458 HSQVVSKNFLDLSDSLXFITFGQSFDVCLRNYITEIYKVNTIFRISQFP 312
           + Q++     +LS+ + + T     D CL NY+ +I K N ++++  FP
Sbjct: 105 YDQLIVTGDFNLSE-IDWTTGAAKTDDCLTNYLCKIIKDNYLWQLIDFP 152


>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
          Length = 863

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 149 SLSINITFIPGPLSSVILV--MYILTACITFILIKLSLFISQS 27
           +L++   F+P  + S+++V  +YIL  C T + + + L+I  S
Sbjct: 246 TLALLCVFLPPYVPSIMIVWWVYILAICTTMVALHMRLYIISS 288


>SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/77 (18%), Positives = 34/77 (44%)
 Frame = +1

Query: 25  ILCEINKDNLIKMNVIQAVKMYITKMTXESGPGMKVILMDKETTSIVSMVYSQSEILQKE 204
           ++CE+ KD+  K  +   V + + K       G ++      TT   + +  ++E+++  
Sbjct: 15  LICELGKDDFKKTGLPMCVAIKLQKAIESLDKGKELKTSLDSTTIKANKILKKTELIELS 74

Query: 205 VYLFERIDSHAKWDNMN 255
               E   +++ W+  N
Sbjct: 75  KKSLEAQFANSNWNEFN 91


>SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1075

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -2

Query: 578  LAASETGG-APADLEKLVGDAVGSNPTLEASNNIEREQVSVHSQVVSKNFLDLSDSLXFI 402
            L  S T G A A+       AVG+   +   N++  E +S  +  V+ N LD++D     
Sbjct: 790  LTVSATDGDAGANSALTYSIAVGNEEAVSNKNSLISEDLSYIALQVTVNVLDINDETPLF 849

Query: 401  TFGQSFDVCLRNYITEIYKVNTIF 330
                SF+V     + EI ++ T+F
Sbjct: 850  Q-SPSFNVS----VNEIERLGTVF 868


>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 180 TVHHTHYAGSFFIH*YHFHSRAALXRHFSNVHFNCLY--HIHFD*IILI 40
           ++HH +    +F H Y++H +     H  + H +  Y  H H D  I+I
Sbjct: 79  SIHHRYR--DYFYHSYNYHHKWQHYHHHHHYHHHLDYDHHYHHDLFIII 125


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/66 (22%), Positives = 36/66 (54%)
 Frame = -2

Query: 221  LSNK*TSFCKISD*LYTILTMLVVSLSINITFIPGPLSSVILVMYILTACITFILIKLSL 42
            L+NK T  C I + L+ I  ++++ + + +  +   +  +   + +L A IT I+I + +
Sbjct: 1187 LTNKPTGLCNIFNRLH-IFIIIIIIIVVVVVVVVVIIIIITATLIVLIAIITSIMIIIII 1245

Query: 41   FISQSM 24
             I+ ++
Sbjct: 1246 IITTTV 1251


>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 141 H*YHFHSRAALXRHFSNVHFNCLYHIHFD*IILI 40
           H YH H       H+ +VH++  +H + D +I+I
Sbjct: 231 HHYHHHLCHDRRHHYHHVHYDHHHHHYHDIVIII 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,548
Number of Sequences: 59808
Number of extensions: 350814
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)