Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30255.Seq
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 301 LNNSHYRRPLFISTYYASIWYINK*Y 378
           L + HYR+P  +S  Y+S  Y+N  Y
Sbjct: 361 LQHLHYRQPPTLSESYSS--YVNSMY 384


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 254 KNATMNILIMHGNKCNNQFATSIAI 180
           KN  + IL  HG +CN+   TSI +
Sbjct: 89  KNPKLGILGTHGRQCND---TSIGV 110


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 254 KNATMNILIMHGNKCNNQFATSIAI 180
           KN  + IL  HG +CN+   TSI +
Sbjct: 90  KNPKLGILGTHGRQCND---TSIGV 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,305
Number of Sequences: 438
Number of extensions: 1972
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)