Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30254.Seq
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    93   2e-20
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    93   2e-20
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   6.7  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 45/72 (62%), Positives = 51/72 (70%)
 Frame = -2

Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
           MVR +VL+  L     A  RG  QVLI P SKVIVKFLTVM K GYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 290 IVVNLTGRLNKC 255
           IV+ L GR+NKC
Sbjct: 61  IVIQLNGRINKC 72



 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 29/44 (65%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
 Frame = -1

Query: 252 VISPRFDVPINDIERWTN-LLPSRQFGYLXLTTSGGXMDHEEAR 124
           VISPRF+V + DIE+W N LLPSRQ G + LTTS G M H EAR
Sbjct: 74  VISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEAR 117


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 45/72 (62%), Positives = 51/72 (70%)
 Frame = -2

Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
           MVR +VL+  L     A  RG  QVLI P SKVIVKFLTVM K GYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 290 IVVNLTGRLNKC 255
           IV+ L GR+NKC
Sbjct: 61  IVIQLNGRINKC 72



 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 29/44 (65%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
 Frame = -1

Query: 252 VISPRFDVPINDIERWTN-LLPSRQFGYLXLTTSGGXMDHEEAR 124
           VISPRF+V + DIE+W N LLPSRQ G + LTTS G M H EAR
Sbjct: 74  VISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEAR 117


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 284 VNLTGRLNKCVSFHLVLMFPSTILKDGLICS 192
           V+L  +      F++ + FPS ++KDG+  S
Sbjct: 88  VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,847
Number of Sequences: 5004
Number of extensions: 22941
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)