Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30254.Seq
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          102   2e-22
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   101   3e-22
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           64   5e-11
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   0.54 
09_06_0136 - 21074420-21074746,21075905-21077026                       27   6.7  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  102 bits (244), Expect = 2e-22
 Identities = 50/72 (69%), Positives = 55/72 (76%)
 Frame = -2

Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
           MVR++VL+ ALK    A  RG  QVLI P SKVI+KFL VM K GYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 290 IVVNLTGRLNKC 255
           IVV L GRLNKC
Sbjct: 61  IVVELNGRLNKC 72



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
 Frame = -1

Query: 252 VISPRFDVPINDIERWT-NLLPSRQFGYLXLTTSGGXMDHEEARR 121
           VISPRFDV + +IE WT  LLPSRQFGY+ LTTS G MDHEEARR
Sbjct: 74  VISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  101 bits (242), Expect = 3e-22
 Identities = 49/72 (68%), Positives = 55/72 (76%)
 Frame = -2

Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
           MVR++VL+ ALK    A  RG  QV+I P SKVI+KFL VM K GYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 290 IVVNLTGRLNKC 255
           IVV L GRLNKC
Sbjct: 61  IVVELNGRLNKC 72



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
 Frame = -1

Query: 252 VISPRFDVPINDIERWT-NLLPSRQFGYLXLTTSGGXMDHEEARR 121
           VISPRFDV + +IE WT  LLPSRQFGY+ LTTS G MDHEEARR
Sbjct: 74  VISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 30/67 (44%), Positives = 40/67 (59%)
 Frame = -2

Query: 455 VLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGKIVVNL 276
           +L+ AL+    A  RG    L+ P S V+V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 275 TGRLNKC 255
            GR+  C
Sbjct: 65  HGRIKDC 71



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = -1

Query: 276 HRQTKQVCVISPRFDVPINDIERW-TNLLPSRQFGYLXLTTSGGXMDHEEA 127
           H + K    ++ R D+   +IE++   +LP+RQ+GY+ +TT  G +DHEEA
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEA 115


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 314 VDDHRAGKIVVNLTGRLNK 258
           VDDH++G+I++   GRLNK
Sbjct: 912 VDDHKSGEIILEFDGRLNK 930


>09_06_0136 - 21074420-21074746,21075905-21077026
          Length = 482

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 320 EIVDDHRAGKIVVNLTGRLNKCVS 249
           EI+D H   K+VV +  R+ +CVS
Sbjct: 346 EILDQHHFDKLVVPVCSRIARCVS 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,265,069
Number of Sequences: 37544
Number of extensions: 149525
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)