Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30254.Seq
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             52   4e-07
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     27   9.1  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 28/43 (65%), Positives = 30/43 (69%)
 Frame = -2

Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMK 342
           MVR+NVL+ AL     A  RG  QV I P SKVIVKFLTVMMK
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMK 43


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
 Frame = -1

Query: 252 VISPRFDVPINDIERW-TNLLPSRQF 178
           VISPRFDV + DIE+W +NLLPSRQF
Sbjct: 3   VISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 249 ISPRFDVPINDIERWTNLLPSRQFGYL 169
           ISP F VP  D ++ ++L+PS+Q  +L
Sbjct: 381 ISPIFTVPKKDGKKKSSLIPSQQITFL 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,699,515
Number of Sequences: 59808
Number of extensions: 175439
Number of successful extensions: 277
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)