Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30254.Seq
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 101 4e-22
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 101 4e-22
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 101 4e-22
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 100 1e-21
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 95 2e-20
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 62 3e-10
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 61 5e-10
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 101 bits (241), Expect = 4e-22
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2
Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
MVR++VL+ ALK A RG QV+I P SKVI+KFL VM K GYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 290 IVVNLTGRLNKC 255
IVV L GRLNKC
Sbjct: 61 IVVELNGRLNKC 72
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = -1
Query: 252 VISPRFDVPINDIERWT-NLLPSRQFGYLXLTTSGGXMDHEEARR 121
VISPRFDV + +IE WT LLPSRQFGY+ LTTS G MDHEEARR
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 101 bits (241), Expect = 4e-22
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2
Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
MVR++VL+ ALK A RG QV+I P SKVI+KFL VM K GYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 290 IVVNLTGRLNKC 255
IVV L GRLNKC
Sbjct: 61 IVVELNGRLNKC 72
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = -1
Query: 252 VISPRFDVPINDIERWT-NLLPSRQFGYLXLTTSGGXMDHEEARR 121
VISPRFDV + +IE WT LLPSRQFGY+ LTTS G MDHEEARR
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 101 bits (241), Expect = 4e-22
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2
Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
MVR++VL+ ALK A RG QV+I P SKVI+KFL VM K GYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 290 IVVNLTGRLNKC 255
IVV L GRLNKC
Sbjct: 61 IVVELNGRLNKC 72
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = -1
Query: 252 VISPRFDVPINDIERWT-NLLPSRQFGYLXLTTSGGXMDHEEARR 121
VISPRFDV + +IE WT LLPSRQFGY+ LTTS G MDHEEARR
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 99.5 bits (237), Expect = 1e-21
Identities = 48/72 (66%), Positives = 54/72 (75%)
Frame = -2
Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
MVR++VL+ LK A RG QV+I P SKVI+KFL VM K GYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 290 IVVNLTGRLNKC 255
IVV L GRLNKC
Sbjct: 61 IVVELNGRLNKC 72
Score = 70.9 bits (166), Expect = 5e-13
Identities = 33/45 (73%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = -1
Query: 252 VISPRFDVPINDIERWT-NLLPSRQFGYLXLTTSGGXMDHEEARR 121
VISPRFDV + +IE WT LLPSRQFG++ LTTS G MDHEEARR
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARR 118
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 95.1 bits (226), Expect = 2e-20
Identities = 46/72 (63%), Positives = 52/72 (72%)
Frame = -2
Query: 470 MVRMNVLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGK 291
MVR +VL+ LK A +G QV+I P SKVI+KFLTVM K GYI EFE VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 290 IVVNLTGRLNKC 255
IVV L GRLN C
Sbjct: 67 IVVELNGRLNNC 78
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = -1
Query: 252 VISPRFDVPINDIERWT-NLLPSRQFGYLXLTTSGGXMDHEEARR 121
VISPR+D+ + +IE WT LLPSRQFGY+ LTTS G MDHEEAR+
Sbjct: 80 VISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARK 124
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 61.7 bits (143), Expect = 3e-10
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = -2
Query: 455 VLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGKIVVNL 276
+L+ AL+ A RG V + P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 275 TGRLNKC 255
GR+N C
Sbjct: 65 QGRVNDC 71
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -1
Query: 240 RFDVPINDIERWTN-LLPSRQFGYLXLTTSGGXMDHEEA 127
R DV +IE++T LP+RQ+GY+ +TT G +DHEEA
Sbjct: 77 RQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEA 115
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = -2
Query: 455 VLSXALKXXXXAXXRGXXQVLIXPCSKVIVKFLTVMMKXGYIGEFEIVDDHRAGKIVVNL 276
+L+ AL+ A RG V + P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 275 TGRLNKC 255
GR+N C
Sbjct: 65 QGRVNDC 71
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -1
Query: 240 RFDVPINDIERWTN-LLPSRQFGYLXLTTSGGXMDHEEA 127
R DV N+I ++T LP+RQ+GY+ +TT G +DHEEA
Sbjct: 77 RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEA 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,533,855
Number of Sequences: 28952
Number of extensions: 122477
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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