Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30252.Seq
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    27   0.13 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   2.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +3

Query: 414 Y*NTSYHLIYLTWHGTST--VCEWCWCGMEF 500
           Y  TS+   +L WH      VC W +CG  F
Sbjct: 326 YGKTSHLKAHLRWHTGERPFVCNWLFCGKRF 356


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -2

Query: 272 ESLNLKDSKT*RT*ILGYNLF*IIIHLFDTRVAISHVIFMILKY*IEYYRRESVQALTYW 93
           E  N    K+ R     +NL+ +++ LFD  + IS V   + +Y   Y  R    + TY+
Sbjct: 103 EIFNCCSKKSFRMNFAIFNLYMVLLLLFDAYLWISSVGVRMFQY---YIGR----SFTYY 155

Query: 92  IPNT 81
           + NT
Sbjct: 156 VCNT 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,475
Number of Sequences: 336
Number of extensions: 3993
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)