Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30252.Seq
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    28   1.3  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   6.9  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   9.1  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    25   9.1  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 554 KTSNNLSFNVARN*IFLFKRRKNNGLFLTKML-LPSRNYGVMEPLNPP*LGTGDLLRNLM 730
           K   ++ FN       L++R  +   FL     L ++ YGVM PL+P   G+   L NL+
Sbjct: 359 KHREHVCFNCGVTETPLWRRTSDKLNFLCNACGLYNKQYGVMRPLSPRNKGSSKALENLV 418


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 428 ISLNLPDLARH*HCV*MVLVWDGI*NSYFG 517
           IS N  D AR  + +  V++WDGI   Y+G
Sbjct: 329 ISHNNTDQARIMNAITFVMMWDGIPIIYYG 358


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 117 FTPIVFDSIFQYHKNYM 167
           FTP + ++I+Q+ +NYM
Sbjct: 768 FTPFITENIYQHLRNYM 784


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 131 IRFNISVS*KLHVKLQHAYQKGVLLFRINYSLEFMSVKSYYPSS 262
           I+ + +V  K++VKLQH +  G+    I+Y    ++ KS Y  S
Sbjct: 30  IKSSENVPDKVNVKLQHVFHYGLNEDSISYYRLDVAKKSVYAES 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,859
Number of Sequences: 5004
Number of extensions: 66163
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)