BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30252.Seq (774 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0368 + 28792168-28792372,28792654-28792853,28793218-287936... 31 1.0 >01_06_0368 + 28792168-28792372,28792654-28792853,28793218-28793675, 28793796-28793847 Length = 304 Score = 31.1 bits (67), Expect = 1.0 Identities = 16/52 (30%), Positives = 30/52 (57%) Frame = +2 Query: 44 SLDFFVMKYSLSKYLESNKLMPEQIHAYSIRFNISVS*KLHVKLQHAYQKGV 199 ++D V K L+K LES K E + S++ + ++S K ++ ++HA G+ Sbjct: 102 AVDLLVQKKKLTKALESIKQRIEVLDKLSMKISEAISVKQNMLIEHALHPGM 153 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,404,483 Number of Sequences: 37544 Number of extensions: 378177 Number of successful extensions: 702 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 690 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 702 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2068401984 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -