Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30251.Seq
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.37 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 3   LIYFILVILL-LEYFVFLKHTFNITLLINHCILF 101
           L Y +L+ILL + YF +    F + LL+  CI +
Sbjct: 227 LFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYY 260



 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 9   YFILVILLLEYFVFLKHTFNITLLINHCILFSLV 110
           Y  +++L + YF +    F + LL   CI + +V
Sbjct: 105 YAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVV 138


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 6    IYFILVILLLEYFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRL 149
            ++F  +IL++++   L H F     I      +L C +    L+ + L
Sbjct: 1331 VFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCTKKKEELSPNAL 1378


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 6    IYFILVILLLEYFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRL 149
            ++F  +IL++++   L H F     I      +L C +    L+ + L
Sbjct: 1331 VFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCTKKKEELSPNAL 1378


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 6    IYFILVILLLEYFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRL 149
            ++F  +IL++++   L H F     I      +L C +    L+ + L
Sbjct: 1331 VFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCTKKKEELSPNAL 1378


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 6    IYFILVILLLEYFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRL 149
            ++F  +IL++++   L H F     I      +L C +    L+ + L
Sbjct: 1331 VFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCTKKKEELSPNAL 1378


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 505 ACXSFPFRNPVKLICIFFGHGNFSSSWLVTYSMTT 401
           A  +FP     K +  F G  NF   +   YS  T
Sbjct: 522 AIRNFPVPQKTKHVRAFLGLCNFYRKFCARYSAAT 556


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 6   IYFILVILLLE---YFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRLTTGPYNPTN 176
           ++ + +IL+ E   Y + ++  +NI       +  +   N    +L SS+  TG    + 
Sbjct: 308 VFILWIILVPEEQVYHLEIEKYYNILYFCRIMVYLNSAINPILYNLMSSKFRTGFIICSE 367

Query: 177 LHRKKY 194
            +RK Y
Sbjct: 368 SNRKFY 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,895
Number of Sequences: 336
Number of extensions: 3029
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)