Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30251.Seq
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    72   8e-14
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.8  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 71.7 bits (168), Expect = 8e-14
 Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
 Frame = +3

Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
           F+  +KKLM+  KF      +VDM KV ++VLKPWI  ++ E++  ED+VVI +V   LE
Sbjct: 16  FTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDEVVINFVYGMLE 75

Query: 435 EKFPC-------------PKKMQINLTGFLNGKEXHAFHGRVMGAVAERAGPVENGIPRI 575
           E                 P+K+Q+NLTGFL      AF   +   +   A   + GIP  
Sbjct: 76  EAVEASKTSDSQNESTLDPRKVQLNLTGFLESNAT-AFTEELWSLIIS-ASQNQYGIPE- 132

Query: 576 LYSSRRKKEI 605
            +   +K+EI
Sbjct: 133 KFILEKKEEI 142


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 590 SAGVKDSGYTVFNWACALSN 531
           +AG+ + G+T  +WA A+ N
Sbjct: 230 NAGIDEDGHTALHWAAAMGN 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,903
Number of Sequences: 5004
Number of extensions: 52853
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)