Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30251.Seq
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900...    87   8e-18
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    33   0.23 
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    31   0.94 
08_02_0259 - 14974526-14974572,14974670-14974742,14974829-149748...    30   1.6  
09_04_0528 - 18348071-18348136,18348477-18351209                       28   6.6  
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275...    27   8.7  

>03_02_0509 -
           9003330-9003446,9003587-9003673,9004113-9004280,
           9004835-9004957,9005081-9005170,9005275-9005295
          Length = 201

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 40/77 (51%), Positives = 55/77 (71%)
 Frame = +3

Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
           FS+K+ KL+K  KF   L   VDM+KVK+DV+KPWI  ++TE+L  ED+V+I ++   LE
Sbjct: 17  FSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLE 76

Query: 435 EKFPCPKKMQINLTGFL 485
           EK    KK+QI LTGF+
Sbjct: 77  EKEADGKKIQIQLTGFM 93



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = +1

Query: 487 MGKXRTPFMGELWELLLSAQAQLKTVYPESFTPAEE 594
           M K    FM ELW LLLSAQ     V P+ F  A+E
Sbjct: 93  MEKNTVKFMKELWSLLLSAQQNASGV-PQQFLDAKE 127


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +3

Query: 348 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQI 467
           ++PWI +KI E L  E+  +++Y+ +  ++     K +++
Sbjct: 843 MRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLEL 882


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 267 EKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILN 389
           +KKLMK+ +     T Q D+S  KL   KP   + ++EI+N
Sbjct: 339 DKKLMKKQQHSKKRTAQADVSDAKLCRRKPKKVRLLSEIIN 379


>08_02_0259 -
           14974526-14974572,14974670-14974742,14974829-14974891,
           14975030-14975097,14975172-14975295,14976434-14976493,
           14976744-14976806,14976902-14977942,14978027-14978093,
           14978188-14978303,14978454-14978540,14978749-14978838,
           14979128-14979214,14979366-14979428,14979509-14979566,
           14980174-14980231,14980349-14980416,14980508-14980587,
           14981084-14981147,14981321-14981392,14981517-14981576,
           14982344-14982398,14982487-14982520,14983845-14983931,
           14984036-14984122,14984211-14984408,14984509-14984639,
           14984739-14984838
          Length = 1066

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 348 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKM-QINLTGFLNGKEXHAFHGRVM 524
           L+ W++ K+  +L     VV++YV    +E       + ++   GF +  E  +F   + 
Sbjct: 7   LRDWVSDKLMSLLGYSKSVVVQYVIRLAKECSSTGDLVGKLVEFGFTSSAETRSFAADIY 66

Query: 525 GAVAERAGPVEN 560
             V  +A  + N
Sbjct: 67  AKVPRKASGISN 78


>09_04_0528 - 18348071-18348136,18348477-18351209
          Length = 932

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/68 (22%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = +3

Query: 270 KKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYV----TNQLEE 437
           +++ K+++  +   +++ M+  K +V++ WI Q +  + +  +DVV E++     N+ ++
Sbjct: 49  RQIKKELEIINAFLKELGMNGYKGEVVETWIRQ-VRRLAHDMEDVVDEFMYVVGKNKHKK 107

Query: 438 KFPCPKKM 461
            + C KK+
Sbjct: 108 SWACVKKI 115


>08_02_0277 -
           15226062-15226169,15227075-15227203,15227416-15227583,
           15227665-15228123,15228865-15229008
          Length = 335

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 252 PFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVL----KPWITQKITEILNMEDDVVIEY 416
           P S++ ++  K+  F D  T+ +D+SK  L  L    +  +  K  E+ +M+D V+  Y
Sbjct: 120 PQSNRRRRGTKRTAFSDSDTEDLDLSKEDLTKLVLEKEELLKSKDEEVKDMKDKVLRSY 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,676,567
Number of Sequences: 37544
Number of extensions: 313695
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)