Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30251.Seq
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   6e-18
SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_48302| Best HMM Match : HORMA (HMM E-Value=1.1)                     28   5.1  
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         28   5.1  
SB_54849| Best HMM Match : HORMA (HMM E-Value=0.54)                    28   5.1  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
 Frame = +3

Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE-EKFPCPKKMQINLTGFLNGKEX 500
           M K+ LDVLKPWIT++IT++L  EDDVV+E+V N LE EK P PK MQIN+TGFL  K  
Sbjct: 1   MEKINLDVLKPWITKRITDMLGFEDDVVLEFVFNMLESEKHPDPKVMQINITGFLQAKNA 60

Query: 501 HAFHGRVMGAVAERAGPVENGIPRILYSSRRKKEI 605
             F G +   +      +  GIP   +  ++K+EI
Sbjct: 61  RIFMGELWELLVSAQENI-GGIP-TEFLEKKKEEI 93


>SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 336 KLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXHAFHG 515
           K  + KPWIT  I + +  +  +   +  ++ +EK    K+    L+  LN  +   FH 
Sbjct: 206 KRQLSKPWITNGILKSIKHKQKMYRSHFFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHS 265

Query: 516 R 518
           +
Sbjct: 266 Q 266


>SB_48302| Best HMM Match : HORMA (HMM E-Value=1.1)
          Length = 330

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 336 KLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXHAFHG 515
           K  + KPWIT  I + +  +  +   +  ++ +EK    K+    L+  LN  +   FH 
Sbjct: 45  KRQLSKPWITNGILKSIKHKQKMYRNHFFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHS 104

Query: 516 R 518
           +
Sbjct: 105 Q 105


>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 648

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 336 KLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXHAFHG 515
           K  + KPWIT  I + +  +  +   +  ++ +EK    K+    L+  LN  +   FH 
Sbjct: 377 KRQLSKPWITNGILKSIKHKQKMYRSHFFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHS 436

Query: 516 R 518
           +
Sbjct: 437 Q 437


>SB_54849| Best HMM Match : HORMA (HMM E-Value=0.54)
          Length = 330

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 336 KLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXHAFHG 515
           K  + KPWIT  I + +  +  +   +  ++ +EK    K+    L+  LN  +   FH 
Sbjct: 45  KRQLSKPWITNGILKSIKHKQKMYRSHFFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHS 104

Query: 516 R 518
           +
Sbjct: 105 Q 105


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
 Frame = +3

Query: 261 DKEKKLMKQMKFGDCL---TQQVDMSKVKL-----DVLKPWITQKITEILNMEDDV-VIE 413
           D   +LMK + F DC+   TQQ +  +++      D+LK +++   +EI   ED + V +
Sbjct: 40  DPRDRLMKPLSFSDCVGNETQQTEDPRIQWRQQQEDMLKEYLSLAQSEINEKEDFLNVKK 99

Query: 414 YVTNQLEEKF 443
              N  +E+F
Sbjct: 100 QRLNVAQEEF 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,278,860
Number of Sequences: 59808
Number of extensions: 365435
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)