Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30251.Seq
(605 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 127 3e-29
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 127 3e-29
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 127 3e-29
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 127 3e-29
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 127 3e-29
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 127 3e-29
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 127 3e-29
AY061759-1|AAL33802.1| 3270|Homo sapiens nesprin-2 gamma protein. 33 1.0
AK128631-1|BAC87539.1| 544|Homo sapiens protein ( Homo sapiens ... 33 1.0
AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein. 33 1.0
AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein. 33 1.0
AB023228-1|BAA76855.3| 3541|Homo sapiens KIAA1011 protein protein. 33 1.0
BC001954-1|AAH01954.1| 683|Homo sapiens PRP3 pre-mRNA processin... 31 3.1
BC000184-1|AAH00184.1| 683|Homo sapiens PRP3 pre-mRNA processin... 31 3.1
AL611942-1|CAH70312.1| 683|Homo sapiens PRP3 pre-mRNA processin... 31 3.1
AK222825-1|BAD96545.1| 683|Homo sapiens PRP3 pre-mRNA processin... 31 3.1
AF016370-1|AAC51926.1| 683|Homo sapiens U4/U6 small nuclear rib... 31 3.1
AF001947-1|AAC09069.1| 682|Homo sapiens U4/U6-associated RNA sp... 31 3.1
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 127 bits (306), Expect = 3e-29
Identities = 63/117 (53%), Positives = 83/117 (70%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMQINLTGFLNGKEXHAFHGRVMGAVAERAGPVENGIPRILYSSRRKKEI 605
K P K MQINLTGFLNGK F G + + + GIP + +K+EI
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIA-GIPS-AFLELKKEEI 131
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 127 bits (306), Expect = 3e-29
Identities = 63/117 (53%), Positives = 83/117 (70%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMQINLTGFLNGKEXHAFHGRVMGAVAERAGPVENGIPRILYSSRRKKEI 605
K P K MQINLTGFLNGK F G + + + GIP + +K+EI
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIA-GIPS-AFLELKKEEI 131
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 127 bits (306), Expect = 3e-29
Identities = 63/117 (53%), Positives = 83/117 (70%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMQINLTGFLNGKEXHAFHGRVMGAVAERAGPVENGIPRILYSSRRKKEI 605
K P K MQINLTGFLNGK F G + + + GIP + +K+EI
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIA-GIPS-AFLELKKEEI 131
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 127 bits (306), Expect = 3e-29
Identities = 63/117 (53%), Positives = 83/117 (70%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMQINLTGFLNGKEXHAFHGRVMGAVAERAGPVENGIPRILYSSRRKKEI 605
K P K MQINLTGFLNGK F G + + + GIP + +K+EI
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIA-GIPS-AFLELKKEEI 131
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 127 bits (306), Expect = 3e-29
Identities = 63/117 (53%), Positives = 83/117 (70%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMQINLTGFLNGKEXHAFHGRVMGAVAERAGPVENGIPRILYSSRRKKEI 605
K P K MQINLTGFLNGK F G + + + GIP + +K+EI
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIA-GIPS-AFLELKKEEI 131
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 127 bits (306), Expect = 3e-29
Identities = 63/117 (53%), Positives = 83/117 (70%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMQINLTGFLNGKEXHAFHGRVMGAVAERAGPVENGIPRILYSSRRKKEI 605
K P K MQINLTGFLNGK F G + + + GIP + +K+EI
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIA-GIPS-AFLELKKEEI 131
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 127 bits (306), Expect = 3e-29
Identities = 63/117 (53%), Positives = 83/117 (70%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE 434
FS+K+KKL+KQ+KF +CL ++VDMSKV L+V+KPWIT+++TEIL EDDVVIE++ NQLE
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 EKFPCPKKMQINLTGFLNGKEXHAFHGRVMGAVAERAGPVENGIPRILYSSRRKKEI 605
K P K MQINLTGFLNGK F G + + + GIP + +K+EI
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIA-GIPS-AFLELKKEEI 131
>AY061759-1|AAL33802.1| 3270|Homo sapiens nesprin-2 gamma protein.
Length = 3270
Score = 32.7 bits (71), Expect = 1.0
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 300 DCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVV-IEYVTNQLEEKFPCPKKMQINLT 476
D LTQ + ++ L+ I + + +I M DDVV IE +E++ K + ++
Sbjct: 243 DELTQSIQELSNQVTALQQKIMESLPQIQRMADDVVAIESEVKSMEKRVSKIKTILLSKE 302
Query: 477 GFLNGKEXHAFHGRVMGAVAERAGPVENGIPRIL 578
F E H HG V + E P++ I I+
Sbjct: 303 IFDFSPEEHLKHGEV---ILENIRPMKKTIAEIV 333
>AK128631-1|BAC87539.1| 544|Homo sapiens protein ( Homo sapiens
cDNA FLJ46790 fis, clone TRACH3029329. ).
Length = 544
Score = 32.7 bits (71), Expect = 1.0
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 300 DCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVV-IEYVTNQLEEKFPCPKKMQINLT 476
D LTQ + ++ L+ I + + +I M DDVV IE +E++ K + ++
Sbjct: 250 DELTQSIQELSNQVTALQQKIMESLPQIQRMADDVVAIESEVKSMEKRVSKIKTILLSKE 309
Query: 477 GFLNGKEXHAFHGRVMGAVAERAGPVENGIPRIL 578
F E H HG V + E P++ I I+
Sbjct: 310 IFDFSPEEHLKHGEV---ILENIRPMKKTIAEIV 340
>AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.
Length = 6884
Score = 32.7 bits (71), Expect = 1.0
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 300 DCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVV-IEYVTNQLEEKFPCPKKMQINLT 476
D LTQ + ++ L+ I + + +I M DDVV IE +E++ K + ++
Sbjct: 3857 DELTQSIQELSNQVTALQQKIMESLPQIQRMADDVVAIESEVKSMEKRVSKIKTILLSKE 3916
Query: 477 GFLNGKEXHAFHGRVMGAVAERAGPVENGIPRIL 578
F E H HG V + E P++ I I+
Sbjct: 3917 IFDFSPEEHLKHGEV---ILENIRPMKKTIAEIV 3947
>AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.
Length = 6885
Score = 32.7 bits (71), Expect = 1.0
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 300 DCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVV-IEYVTNQLEEKFPCPKKMQINLT 476
D LTQ + ++ L+ I + + +I M DDVV IE +E++ K + ++
Sbjct: 3858 DELTQSIQELSNQVTALQQKIMESLPQIQRMADDVVAIESEVKSMEKRVSKIKTILLSKE 3917
Query: 477 GFLNGKEXHAFHGRVMGAVAERAGPVENGIPRIL 578
F E H HG V + E P++ I I+
Sbjct: 3918 IFDFSPEEHLKHGEV---ILENIRPMKKTIAEIV 3948
>AB023228-1|BAA76855.3| 3541|Homo sapiens KIAA1011 protein protein.
Length = 3541
Score = 32.7 bits (71), Expect = 1.0
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 300 DCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVV-IEYVTNQLEEKFPCPKKMQINLT 476
D LTQ + ++ L+ I + + +I M DDVV IE +E++ K + ++
Sbjct: 492 DELTQSIQELSNQVTALQQKIMESLPQIQRMADDVVAIESEVKSMEKRVSKIKTILLSKE 551
Query: 477 GFLNGKEXHAFHGRVMGAVAERAGPVENGIPRIL 578
F E H HG V + E P++ I I+
Sbjct: 552 IFDFSPEEHLKHGEV---ILENIRPMKKTIAEIV 582
>BC001954-1|AAH01954.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXH 503
+SK +LD LKPWI + + +L + V+ N + + KK +L FL+
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLKPFLDDSTLR 61
Query: 504 AFHGRVMGAVAE 539
F ++ AV E
Sbjct: 62 -FVDKLFEAVEE 72
>BC000184-1|AAH00184.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXH 503
+SK +LD LKPWI + + +L + V+ N + + KK +L FL+
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLKPFLDDSTLR 61
Query: 504 AFHGRVMGAVAE 539
F ++ AV E
Sbjct: 62 -FVDKLFEAVEE 72
>AL611942-1|CAH70312.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXH 503
+SK +LD LKPWI + + +L + V+ N + + KK +L FL+
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLKPFLDDSTLR 61
Query: 504 AFHGRVMGAVAE 539
F ++ AV E
Sbjct: 62 -FVDKLFEAVEE 72
>AK222825-1|BAD96545.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog protein.
Length = 683
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXH 503
+SK +LD LKPWI + + +L + V+ N + + KK +L FL+
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLKPFLDDSTLR 61
Query: 504 AFHGRVMGAVAE 539
F ++ AV E
Sbjct: 62 -FVDKLFEAVEE 72
>AF016370-1|AAC51926.1| 683|Homo sapiens U4/U6 small nuclear
ribonucleoprotein hPrp3 protein.
Length = 683
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXH 503
+SK +LD LKPWI + + +L + V+ N + + KK +L FL+
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLKPFLDDSTLR 61
Query: 504 AFHGRVMGAVAE 539
F ++ AV E
Sbjct: 62 -FVDKLFEAVEE 72
>AF001947-1|AAC09069.1| 682|Homo sapiens U4/U6-associated RNA
splicing factor protein.
Length = 682
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 324 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKEXH 503
+SK +LD LKPWI + + +L + V+ N + + KK +L FL+
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMD-KKKAADHLKPFLDDSTLR 61
Query: 504 AFHGRVMGAVAE 539
F ++ AV E
Sbjct: 62 -FVDKLFEAVEE 72
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,467,590
Number of Sequences: 237096
Number of extensions: 1792915
Number of successful extensions: 6971
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6962
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -