Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30251.Seq
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.76 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 AGHPFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMED 398
           A      +E  L    K G C   Q  MSK++    KP + ++ T++  +E+
Sbjct: 5   ASQLLKSRESLLSNAYKQGFCQPTQRTMSKIQWRKPKPAMVEEKTQLRYLEE 56


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   LIYFILVILLLEYFVFLKHTF 65
           LIYFI  I L  Y+ FL+  F
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAF 240


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +2

Query: 479 IPKWERXARLSWESYGSCC*ARRPS*KRYTPNPLLQQ 589
           +P      +L W  +  C   + P+  R   NP+  Q
Sbjct: 298 VPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQ 334


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 294 TSFASSASSPCH*TGVLLCTSSRIHHHLAN 205
           T+  ++A++    TG++   + + HHHL N
Sbjct: 117 TTATAAATATTTATGLIKQETLQRHHHLQN 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,781
Number of Sequences: 438
Number of extensions: 3771
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)