Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30221.Seq
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   31   1.0  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         30   2.3  
SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)                29   3.1  
SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)                   29   5.4  
SB_27985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)                 28   9.5  

>SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = -1

Query: 176 AIEDKEKRIKFLEAALLKTQTDLSK-LQSRTATIEKISRDLNIEIHEIPESRNE 18
           A++DK K ++    ++ K + DLSK  +++++T E  SR+  +E++ I + + +
Sbjct: 277 AMDDKMKSLRLELESVSKQKNDLSKQFETQSSTFENTSRETQVELNLIRKEKEQ 330


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 172 IANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFININFTTLNVFYL*NEYDKL 336
           + NL +LC  + K+  +K  ++ ++      +L+ +++   TLN F+  +EYD L
Sbjct: 558 VLNLLALCVFLTKTFCIKKSNFLLLNLTVTDLLVGLSLGAKTLNEFFKPSEYDLL 612


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -1

Query: 197 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
           E    K  I+D E  +++L+  L     D++K ++R   +EK   +L  E+ ++   RNE
Sbjct: 538 ESESMKGKIKDLEDEVRYLKERL----EDMAKEKTRRRELEKKIEELQDELDDVSTRRNE 593


>SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)
          Length = 324

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -1

Query: 194 QRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESR 24
           Q+D +   E+   ++K LE+A+ + ++DLS   +R    E I      E+    E +
Sbjct: 245 QKDLETLREESSNKVKELESAISQLRSDLSTANTRLKEKEDIISSTRTELGSTREEK 301


>SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)
          Length = 412

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 170 EDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNEN 15
           ED  +  + LE    +  TD  +L +R   +E  SR  N+ IH +PE   +N
Sbjct: 111 EDVAEITERLETVATRETTD--QLLTRVEGLENRSRRNNVIIHNVPEEAEKN 160


>SB_27985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -1

Query: 170 EDKEKRIKFLEAALLK-TQT---DLSKLQSRTATIEKISRDLNIEIHEIPESR 24
           ED+  +++  + A  + TQT   D+S +QS    +EK S +   EIH  P S+
Sbjct: 175 EDRTPQVRGRKRARTRITQTNDSDVSDIQSNNTPLEKDSSNAQDEIHHTPPSQ 227


>SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
          Length = 320

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 211 SVVLKGLSYQVIKSLKKYVLIFININFTTLNVFYL 315
           SVVL  L+  V+   ++Y+L+FI    T L + Y+
Sbjct: 162 SVVLSYLATFVMNKDQRYLLVFIQFGLTCLIIIYI 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,162,611
Number of Sequences: 59808
Number of extensions: 331379
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)