Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30221.Seq
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.58 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 605 KSGENLKNRLTIQIDNGYGGVERYAWDHWL-MHAK 706
           +  E  + RL  ++D+  GGV      HWL +H K
Sbjct: 485 EDSEEFRQRLRKELDSKTGGVNLKGHAHWLTLHFK 519


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 700 MHQPMIPSVPLHAAISIINLYGK 632
           +H P +P +PLH     +++ G+
Sbjct: 436 IHGPPLPPLPLHTECEDLSVSGE 458


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 700 MHQPMIPSVPLHAAISIINLYGK 632
           +H P +P +PLH     +++ G+
Sbjct: 436 IHGPPLPPLPLHTECEDLSVSGE 458


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 80  IEKISRDLNIEIHEIPES 27
           I+K ++D+N+EI   P+S
Sbjct: 461 IDKETKDMNLEISTRPKS 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,567
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)