Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30221.Seq
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot...    31   0.84 
At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote...    29   2.6  
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote...    29   2.6  
At1g58070.1 68414.m06581 expressed protein                             29   3.4  
At3g15600.1 68416.m01976 hypothetical protein low similarity to ...    29   4.5  
At5g28220.1 68418.m03417 expressed protein predicted proteins, A...    28   5.9  
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont...    28   5.9  
At2g22560.1 68415.m02674 kinase interacting protein-related simi...    28   5.9  

>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
           contains Pfam profile PF00439: Bromodomain
          Length = 475

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -1

Query: 170 EDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRD 60
           E K+KR+  L+AALLK++  +  L+S+  +++  S D
Sbjct: 75  ELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESND 111


>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 457 FLYITLFLSRCIGSDNE*DKREL 525
           FL +T F+SRC+ +D E DK+ L
Sbjct: 10  FLLVTTFVSRCLSADIESDKQAL 32


>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 457 FLYITLFLSRCIGSDNE*DKREL 525
           FL +T F+SRC+ +D E DK+ L
Sbjct: 10  FLLVTTFVSRCLSADIESDKQAL 32


>At1g58070.1 68414.m06581 expressed protein
          Length = 284

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 152 IKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHE 39
           +K LEA + +T+T++  L+ R +  E     LN E+H+
Sbjct: 133 LKKLEAEITETKTEVKMLKERESETEVALATLNAELHK 170


>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 591

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 191 RDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
           +DF    E+++KR+K LEAA+   Q   S +++  A   K   D   E+ E  ++  E
Sbjct: 356 KDFSKKYEEQDKRLKLLEAAIKSIQ---SGIRTEDACGSKEIDDKENELEEGSDAETE 410


>At5g28220.1 68418.m03417 expressed protein predicted proteins,
           Arabidopsis thaliana, D.melanogaster, C.elegans and
           S.pombe
          Length = 316

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 593 RELL-KSGENLKNRLTIQIDNGYGGVERY 676
           RE++ K+ E   N+L IQ+DNG GG   Y
Sbjct: 12  REMVTKTEEKQLNQLEIQVDNGGGGTWEY 40


>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 736

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -1

Query: 179 LAIEDKEKRIKF----LEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESR 24
           +++EDK  R++     LE  L K QT++   + +  ++EK  +DL   I  + E +
Sbjct: 458 ISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEK 513


>At2g22560.1 68415.m02674 kinase interacting protein-related similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]; weak similarity to Myosin II heavy chain,
           non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
          Length = 891

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 179 LAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPE 30
           +AIED+E R    E A+   Q  L +LQ +     + +R+ +++I E  E
Sbjct: 180 VAIEDEEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKESKE 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,605,387
Number of Sequences: 28952
Number of extensions: 236552
Number of successful extensions: 584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)