Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30218.Seq
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          119   3e-27
11_01_0155 - 1287003-1287452                                          119   3e-27
07_03_0227 - 15398371-15398925                                         30   1.7  
03_06_0097 - 31632238-31632525,31633386-31633769                       30   1.7  
11_06_0598 - 25391923-25393197                                         28   9.3  
11_06_0168 + 20868696-20870072                                         28   9.3  
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849...    28   9.3  
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    28   9.3  
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    28   9.3  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  119 bits (286), Expect = 3e-27
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +2

Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
           +G    S    IRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKF
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135

Query: 404 GGPGARARYQKSYR 445
           GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149



 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 41/79 (51%), Positives = 58/79 (73%)
 Frame = +3

Query: 18  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 197
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 198 SMVDIRVTVKGGGHVAQVY 254
             +D+R+ V+GGG  +Q+Y
Sbjct: 67  KDIDMRIRVRGGGKTSQIY 85


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  119 bits (286), Expect = 3e-27
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +2

Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
           +G    S    IRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKF
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135

Query: 404 GGPGARARYQKSYR 445
           GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149



 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 41/79 (51%), Positives = 58/79 (73%)
 Frame = +3

Query: 18  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 197
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 198 SMVDIRVTVKGGGHVAQVY 254
             +D+R+ V+GGG  +Q+Y
Sbjct: 67  KDIDMRIRVRGGGKTSQIY 85


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -1

Query: 168 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 58
           +P +C A  W  P+   A  H  FH     C+ + RW +
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 30  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 200
           Q +   GR+KTA A    + G G + +N R         P  ++Y  + P++ LG E  +
Sbjct: 96  QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152

Query: 201 MVDIRVTVKGGG 236
             D+ V V GGG
Sbjct: 153 SYDVFVKVHGGG 164


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 426 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 274
           LA    PP  L S      TS L  + T +  ++    S+TY    AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304


>11_06_0168 + 20868696-20870072
          Length = 458

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 636 NVVTGKTLALPNLIALQQIPP 698
           N +TG+ +ALP++I + Q+ P
Sbjct: 161 NTITGEQIALPSVITINQVTP 181


>08_02_0526 +
           18184146-18184168,18184247-18184438,18184846-18184954,
           18185071-18185220,18185973-18186136,18186273-18186359,
           18187083-18187137,18187911-18188333
          Length = 400

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 10  RQDVSPSRPSKYSDVRKPPPQLRIAS 87
           R+  S S P K SD R PPP+ R  S
Sbjct: 33  RRSTSRSPPPKKSDSRSPPPRRRSTS 58


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 48  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 227
           G++K + A  + + G G   VN +  D   P +L ++          +     D+  TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353

Query: 228 GGGHVAQV 251
           GGG   QV
Sbjct: 354 GGGVSGQV 361


>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 111 NGRPLDLVEPRLLQYKLQEPILLL 182
           NG PLD V+P+L ++  +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,347,988
Number of Sequences: 37544
Number of extensions: 501945
Number of successful extensions: 1147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)