Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30217.Seq
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.18
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 31 0.24
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 29 0.55
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 29 0.55
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 28 1.3
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 1.7
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 28 1.7
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 3.0
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 3.0
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 3.9
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 6.8
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 6.8
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 26 6.8
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 9.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 9.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.0
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.1 bits (67), Expect = 0.18
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYT 109
FS DGKY T T+D ++K+W T ++ ++
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 310 WVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTY 444
W H V L +S + + SC D VY N +DG VK++Y
Sbjct: 101 WTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGKVKRSY 144
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 29.5 bits (63), Expect = 0.55
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETN 88
FS DG+Y ++++D L++W E++
Sbjct: 202 FSSDGRYLCSVSEDRTLRLWSIESS 226
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 29.5 bits (63), Expect = 0.55
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 NGKLLIYSISQAKIINVWVPAKHFS-AKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVK 435
NG +++YS + V KH + AL S K L S + D VY W++ G
Sbjct: 209 NGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVL-SGSWDKMVYYWDLNTGDAI 267
Query: 436 QTYN 447
TYN
Sbjct: 268 STYN 271
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEY 106
F DGK+ +T ++DG +K+W +++ Y
Sbjct: 91 FHCDGKWLATSSEDGTVKVWDMRAPSVQRNY 121
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTCPTVDKP 163
FS+DG+ + + + D +K+W TE + D LT+ + DKP
Sbjct: 318 FSQDGRSFLSTSFDKTIKLWDTELGKCLNCFNSD-RLTNCVKFQVDPDKP 366
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIW 73
FS DGKY +T +D +++IW
Sbjct: 342 FSPDGKYLATGVEDQQIRIW 361
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 340 VTALDWSRKYGLYSCTKDSRVYEWN 414
VTA+DWS + L S + D V WN
Sbjct: 440 VTAVDWSSEGQLASISDDGSVRVWN 464
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWGTET-NVLKQEYTP 112
+ DG+Y T D LK+W T L YTP
Sbjct: 274 NRDGRYMVTAGADSLLKVWDLRTYKELHSYYTP 306
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +1
Query: 235 PMHSIRHTNGKLLIYSISQAKIINVW--------VPAKHFSAKVTALDWSRKYGLYSCTK 390
P+H + +G L+ S S+ + +W +A +T + W + +YS +
Sbjct: 230 PLH-LAPDSGPYLLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNWIYSSSY 288
Query: 391 DSRVYEWNIEDG 426
D + W+ +DG
Sbjct: 289 DKTIRIWDAKDG 300
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 6.8
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Frame = +1
Query: 235 PMHSIRHTNGKLLIYSISQAKIINVWVPAKH-----FSAKV-----TALDWSRKYGLYSC 384
P++S+R + L+ S S I +W + FSA + AL SR L+SC
Sbjct: 394 PVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSR---LFSC 450
Query: 385 TKDSRVYEWNIE 420
+ D + +W+IE
Sbjct: 451 SLDGTIKQWDIE 462
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 235 PMHSIRHTNGKLLIYSISQAKIINVW 312
P+ I++ + L++S ++ K+INVW
Sbjct: 12 PLTQIKYNHDGDLLFSCAKDKVINVW 37
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 77 TETNV-LKQEYTPDLHLTSTLPTCPTVDKPVSQSVSNLK 190
T+TNV L + PD L+S L +C + + SQS+ N++
Sbjct: 87 TDTNVELPKINLPDSSLSSKLQSCKSACENSSQSLLNVE 125
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPD----LHLTSTLP 139
FS +G+Y +T G + IW +T L +E D + +T+ LP
Sbjct: 483 FSHNGRYLATGDTSGGVCIWSCKTAKLFKELGSDNSELIAVTNVLP 528
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEY 106
FS D KY + ++D ++W +T Y
Sbjct: 387 FSPDNKYLLSCSEDASARLWSVDTKTALVAY 417
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 349 LDWSRKYGLYSCTKDSRVYEWNIEDGSV 432
LDWS + + + VY WN + GSV
Sbjct: 186 LDWSN-LNVVAVALERNVYVWNADSGSV 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,121
Number of Sequences: 5004
Number of extensions: 66471
Number of successful extensions: 243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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