Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30217.Seq
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1163 - 24439976-24440023,24440562-24440597,24440932-244410... 31 1.0
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842... 31 1.0
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868... 30 1.8
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 30 2.3
07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705 30 2.3
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 30 2.3
03_05_0724 - 27147479-27147706,27147830-27147920,27148002-271480... 29 3.1
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 29 4.1
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 28 7.1
03_05_0525 + 25200207-25200580,25201061-25201751 28 7.1
03_05_0522 - 25161595-25162285,25162394-25163139 28 7.1
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 28 7.1
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 28 7.1
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 28 7.1
>07_03_1163 -
24439976-24440023,24440562-24440597,24440932-24441018,
24441349-24441492,24441782-24441916,24442215-24442279,
24442395-24442477,24442607-24442642,24443343-24443449,
24443558-24443658,24443750-24443909
Length = 333
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 340 VTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNI 450
V+A+ W + +YS + D V +W+++ G K+T+N+
Sbjct: 243 VSAVTWPERQTIYSASWDHSVRQWDVQTG--KETWNM 277
>01_01_1069 -
8420454-8420670,8421272-8421447,8421556-8421738,
8421885-8421980,8422064-8422192,8422266-8422445,
8422524-8422634,8422714-8422869,8422983-8423078,
8423160-8423327,8423402-8423642,8423724-8423851,
8424042-8424134,8424214-8424309,8424431-8424523,
8424741-8424850,8424999-8425134,8425215-8425315,
8426029-8426152,8426237-8426411,8426523-8426681,
8427423-8427536,8427669-8427848,8428926-8429005
Length = 1113
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +1
Query: 175 SFELKREPKQFKCEYKRK*VPMHSIRHTNGKLLIYSISQ-AKIINVWVPAKHFSAKVTAL 351
SFE P C + ++ + +GK+ + ++ P K + + +
Sbjct: 467 SFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLYSA 526
Query: 352 DWSRKYGLYSC--TKDSRVY--EWNIEDGSVKQTYN 447
D +R L+SC +KD Y EWN +GS+K+TY+
Sbjct: 527 DGTR---LFSCGTSKDGDSYLVEWNESEGSIKRTYS 559
>01_03_0084 -
12286416-12286514,12286632-12286683,12286771-12286871,
12287498-12287650,12287703-12287762,12287872-12287998,
12288581-12288708,12289196-12289291,12289473-12289526,
12289603-12289689,12290954-12291057,12291163-12291246,
12291374-12291422,12291523-12291886,12292186-12292226
Length = 532
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWGTETNVLKQEYTP 112
A+FS DG T + D +K+W T+T Q + P
Sbjct: 359 AIFSTDGSRVITASSDCTVKVWDTKTTDCLQTFKP 393
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWGTETNVLKQE 103
A FS DG+Y + + DG +++W + LK++
Sbjct: 224 ARFSPDGQYLVSCSVDGIIEVWDYISGKLKKD 255
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 391 DSRVYEWNIEDGSVKQTYN 447
DS + EWN +G++K+TYN
Sbjct: 583 DSHLVEWNETEGAIKRTYN 601
>07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705
Length = 835
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Frame = -3
Query: 549 MMQLLSTGISCADWWYN--FY-----GVYIAPLLRIIFNRNIIGL 436
++++ G++ DWW N FY GVY+A +L I+ R ++GL
Sbjct: 642 LVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKR-LLGL 685
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTCPTVD 157
FSEDGK+ + + DG L+IW D+ +TS L P +D
Sbjct: 495 FSEDGKWLISSSMDGTLRIWDISLARQIDAMHVDVSITS-LSMSPNMD 541
>03_05_0724 -
27147479-27147706,27147830-27147920,27148002-27148060,
27148197-27148312,27148389-27148472,27148677-27148824,
27148958-27149103,27149610-27149729,27149900-27149998,
27150787-27150828,27150915-27151017
Length = 411
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLK 97
FS DG ++ + DGR+ +W T T L+
Sbjct: 132 FSSDGNLLASGSFDGRINVWNTATRTLQ 159
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 361 RKYGLYSCTKDSRVYEWNIEDGS 429
R G Y+ TKD ++ WN+ +GS
Sbjct: 202 RVTGAYTITKDGAIFTWNLVEGS 224
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 259 NGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSR--KYGLYSCTKDSRVYEWNIEDGSV 432
+G L I+ A+ + + A H SA+VT+ +++ +Y L SC KDS + W + G +
Sbjct: 319 DGSLRIWDGISAECVRPIIGA-HASAEVTSAIFTKDERYVL-SCGKDSCIKLWEVGSGRL 376
Query: 433 KQTY 444
+ Y
Sbjct: 377 VKQY 380
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIW 73
+ +S G Y T +KDG L+IW
Sbjct: 303 QVRYSSTGSLYVTASKDGSLRIW 325
>03_05_0525 + 25200207-25200580,25201061-25201751
Length = 354
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIW 73
SE G Y +++T DGRL IW
Sbjct: 154 SEKGVYLASLTIDGRLSIW 172
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIW 73
SE G Y +++T DGRL IW
Sbjct: 278 SEKGVYLASLTIDGRLSIW 296
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 373 LYSC--TKD--SRVYEWNIEDGSVKQTY 444
L+SC +KD S + EWN +G+VK+TY
Sbjct: 560 LFSCGTSKDGESHLVEWNESEGAVKRTY 587
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTC 145
FS DG+Y +T +DG +++W V++ E +L P+C
Sbjct: 279 FSSDGQYLATGGEDGVVRVW----RVVEGERPNELDFAEDDPSC 318
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 379 SCTKDSRVYEWNIE---DGSVKQTYNISIENNTKQGSNINAIKIIPPISTRNPG 531
S T D + EW DGS++ ++ + + G INA+K+I PI + PG
Sbjct: 119 SGTYDKNIEEWPQRGGADGSLR--FDAELSHGANAGL-INALKLIQPIKDKYPG 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,901,349
Number of Sequences: 37544
Number of extensions: 389332
Number of successful extensions: 865
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -