Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30217.Seq
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053)                     46   3e-05
SB_9416| Best HMM Match : WD40 (HMM E-Value=0)                         36   0.027
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.063
SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12)                   31   0.77 
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  30   2.4  
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              30   2.4  
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)                  30   2.4  
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                29   3.1  
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  29   5.5  

>SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053)
          Length = 321

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTST 133
           F  +G++ + +T DGRLK+W      LK +YTP  HL++T
Sbjct: 10  FDNNGRFLALLTPDGRLKVWDCTNGSLKNQYTPSSHLSTT 49



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 331 SAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKII-P 507
           S+KV  ++WSR   LYSC+ D  + EW  E    K  +   IE  TK  +++ ++ +   
Sbjct: 67  SSKVNDVEWSRNGELYSCSSDKYIVEWCTE----KAEHKRYIELETKAKNSLISLSLTDE 122

Query: 508 PIS 516
           PIS
Sbjct: 123 PIS 125


>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 700

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 322 KHFSAKVTALDWSRKYG-LYSCTKDSRVYEWNIEDGSVKQTYNISIENNT 468
           K   + + AL + +  G LYS  +DS +  WN+ +  +K  Y +S+E++T
Sbjct: 27  KRHRSGINALQYDKSNGRLYSAGRDSIIRCWNVRNERIKDPYMVSLEHHT 76


>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 310 WVPAK--HFSAKVTALDWS---RKYGLYSCTKDSRVYEWNIEDGSVKQTYNIS 453
           W P++   +S+KV +L WS    +Y L++C  D     W I   S  QT++++
Sbjct: 301 WKPSEVQAYSSKVLSLLWSLGQHQYNLFTCGPDGNTMWWRIRPDSTDQTFHLA 353


>SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12)
          Length = 873

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 385 TKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNI 486
           +K   +  WN E+ S+   +++S  NN+K G+++
Sbjct: 381 SKSIEIVSWNFEEWSIAVVFDVSAVNNSKNGTSL 414


>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
 Frame = -3

Query: 507 WYNF--YGVYIAPLLRIIF----NRNIIGLFN*TIFYVPLIDSTVLSTAVQTVFSTPIQG 346
           W N   Y +Y+ PL  +      N N I  FN +I        T+   +  TV    IQ 
Sbjct: 655 WLNLFIYLMYLMPLTVLAVHSKQNENTICNFNSSISKSEYSGKTLPCDSKDTV----IQV 710

Query: 345 GHFSAKMFGGHPNIYYFRLTY*VY*QFTICMPNTMHWDSFSFVLAF 208
            HFS  +      +  F   Y    Q+ + MPN M W ++ F   F
Sbjct: 711 MHFSVMLMTAFMCLREFMQMYNNRLQYFLYMPNYMEWTAYIFTFLF 756


>SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 5   EAMFSEDGKYYSTITKDGRLKIWGTETNVLKQEYT 109
           +  FSED +Y  T + D   ++W  E   + +EY+
Sbjct: 246 DCAFSEDSQYLVTASSDNLARLWNVEAGEVVREYS 280


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 23  DGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTCPTVDKPVSQSVSN 184
           D KY++T  KDG L +W T+ N+   ++       + +  CP      ++S++N
Sbjct: 779 DDKYFATCAKDGVLHLWTTD-NLEHMQFQVVGQSCNCVAFCPIPPATPTKSLTN 831


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 14   FSEDGKYYSTITKDGRLKIWGTET 85
            +S DG Y +T   DG++K+W T T
Sbjct: 1259 YSPDGNYIATGGDDGKVKLWNTMT 1282


>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
          Length = 447

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTP 112
           +S D KY+ T ++D ++ +WG +    K+ + P
Sbjct: 348 WSHDDKYFITASRDKKVIMWGLDNTADKETWVP 380


>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 622

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -3

Query: 588 SHLYCEASKD*ADMMQLLSTGIS------CADWWYNFYGVYIAPLLRIIFNRN 448
           S+LY EAS    D    L +G+       C  +WY+ YG +I   LR+I   N
Sbjct: 371 SYLYIEASGHKQDEAARLVSGVLDANETVCLQFWYHMYGRHIGS-LRVIITSN 422


>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWGTETNVLKQEY 106
           FS DG+Y ++ + D R+ IW T+T  L   +
Sbjct: 341 FSPDGRYLASGSFDKRVHIWSTQTGNLVHSF 371


>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 8   AMFSEDGKYYSTITKDGRLKIWGTETNVLKQE 103
           A FS DG+Y  T + DG +++W   T  ++++
Sbjct: 220 AAFSPDGQYLVTGSVDGFIEVWNFTTGKIRKD 251


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 322 KHFSAKVTALDWSRKYG-LYSCTKDSRVYEWNI 417
           K  + KV  + WS+    + SC  D  VYEWN+
Sbjct: 271 KGHNGKVRQVIWSQDDSKIISCGMDGAVYEWNV 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,383,038
Number of Sequences: 59808
Number of extensions: 470210
Number of successful extensions: 1084
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)