Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30217.Seq
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    34   0.097
AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical...    34   0.097
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    31   0.68 
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    31   1.2  
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    30   1.6  
Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp (s...    30   2.1  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   4.8  
U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine re...    28   6.4  
U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U80029-14|AAB37593.2|  213|Caenorhabditis elegans Hypothetical p...    28   8.4  

>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 2    AEAMFSEDGKYYSTI-TKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTCPTVDKPVSQSV 178
            A   FSEDGKY +T   +DG++  + T  + L       L LT + P  PTV  P + S 
Sbjct: 1249 AAVAFSEDGKYLATYGAEDGKINFFQTSQSFLGMGQA-QLKLTKSQP-APTVSVPTTPSG 1306

Query: 179  SNLK 190
            ++ +
Sbjct: 1307 TSFR 1310


>AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical
           protein Y48G1C.7 protein.
          Length = 623

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 20  EDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHL-TSTLPTCPTVDKPVSQSVSN 184
           +  K    + ++G+L+IW T ++         LH+ T+TLP CP + K V+  + N
Sbjct: 201 KSAKQALALNREGQLRIWKTPSSHRSDLIEFQLHVYTATLPRCPRLRKKVTYVLKN 256


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 5   EAMFSEDGKYYSTITKDGRLKIWGTETN 88
           +A+FS +G+Y  T   D ++KIW  E N
Sbjct: 330 DAIFSSEGRYIFTGGNDNQVKIWDVENN 357


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +2

Query: 23  DGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTCPTVDKPVSQSVSNLK 190
           +G Y S + K G  K  G+    +KQ    DL L  TLPT    D+P S ++  L+
Sbjct: 657 NGYYQSMLRKAGTKKQDGSYDAAIKQI---DLDLARTLPTNKLFDEPDSANIEKLR 709


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 38  STITKDGRLKIWGTETNVLKQEYTPDLHLTS 130
           +TIT+D RL IWG  TN  ++   P ++  S
Sbjct: 713 ATITEDDRLMIWGNFTNAQQRMEMPQMNAKS 743


>Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical
           protein F28C6.3 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWGTETN 88
           +SE+ + Y T +KDG +KIW   +N
Sbjct: 267 YSENARLYVTASKDGHVKIWDGVSN 291


>AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 17 protein.
          Length = 567

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 5   EAMFSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTCPTVDK 160
           E  F+ +G  + + + D  +K+W TET  +KQ +    H+   L   P  DK
Sbjct: 324 EVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRFHTG-HVPYCLKYHPDDDK 374


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIW 73
           FSE+G Y +T ++DG +K+W
Sbjct: 388 FSENGYYLATGSEDGEVKLW 407


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 259 NGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 426
           +G + I+   Q  ++     + H +A VT L W  +  +YS ++D  V  W  +DG
Sbjct: 216 DGNIFIWDTVQGTVVRCL--SGH-TASVTCLRWGGEGLIYSGSQDRTVKMWRADDG 268


>U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 3 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 376 YSCTKDSRVYEWNIEDGSVKQTYNISIENN 465
           YSCT       +NI +   ++ YNIS E N
Sbjct: 370 YSCTSKCNSVRYNINNNDDEELYNISGETN 399


>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical
           protein F55F8.3 protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 8   AMFSEDGKYYSTITKDGRLKIWGTETN 88
           A +S DG   +T  +DG++KIW + ++
Sbjct: 366 AEYSPDGSLMATGAEDGKVKIWNSRSS 392


>U80029-14|AAB37593.2|  213|Caenorhabditis elegans Hypothetical
           protein T20D4.4 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +1

Query: 373 LYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKI 501
           L++ + D+R ++ ++EDG   +++++ +   +KQ  N   I I
Sbjct: 171 LWTISLDARAFKADLEDGINSESFSVEVFWKSKQDHNQTTISI 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,582,507
Number of Sequences: 27780
Number of extensions: 364033
Number of successful extensions: 876
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)