Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30217.Seq
(767 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21970.1 68417.m03180 expressed protein contains Pfam profile... 31 1.1
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 2.6
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 29 3.4
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 29 3.4
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 29 4.5
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 29 4.5
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 29 4.5
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 4.5
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 4.5
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 4.5
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 4.5
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 4.5
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 29 4.5
At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containi... 29 4.5
At1g75730.1 68414.m08797 expressed protein 28 6.0
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 28 7.9
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 28 7.9
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 28 7.9
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 28 7.9
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 28 7.9
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 28 7.9
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 28 7.9
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 28 7.9
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 7.9
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 7.9
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 28 7.9
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 7.9
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 7.9
>At4g21970.1 68417.m03180 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584; expression
supported by MPSS
Length = 181
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 319 AKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIED 423
AK SA + DWS+ YG S ++ W I+D
Sbjct: 56 AKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDD 90
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIW 73
FS DGKY +T +DG +KIW
Sbjct: 206 FSPDGKYLATGGEDGVVKIW 225
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIW 73
FSEDGK+ + + DG L+IW
Sbjct: 565 FSEDGKWVISSSMDGSLRIW 584
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLK--QEYTPDLHL 124
F+ G T + D LKIWGT+ ++ +EY P +HL
Sbjct: 221 FNAAGDKMVTCSDDLTLKIWGTDIAKMQSGEEYAPWIHL 259
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWGTETNVLKQEY------TPDLHLTS 130
A F+ DG Y T KD +++W +L + Y D+H+TS
Sbjct: 24 ARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTS 70
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +1
Query: 163 RQSISFELKREPKQFKCEYKRK*VPMHSIRHTNGKLLIYSISQ-AKIINVWVPAKHFSAK 339
R+ +FE P C + ++ + +GK+ + ++ P K +
Sbjct: 486 RKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPGKWCTRM 545
Query: 340 VTALDWSRKYGL-YSCTKDSRVYEWNIEDGSVKQTY 444
+ + D +R + S DS + EWN +GS+K+TY
Sbjct: 546 LYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTY 581
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVL 94
FS DG Y +T+ +DG L+I+ T L
Sbjct: 311 FSNDGAYLATVGRDGYLRIFDFSTQKL 337
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW ET L+ E TP+ H
Sbjct: 516 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 549
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTST 133
A+F+ DG T + D +K+W ++T Q + P L T
Sbjct: 353 AIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGT 394
>At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 761
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = -1
Query: 377 YKPYFLLQSRAVTLALKCLAGTQTFIIFA*LIEYINSLPFVCLILCIGTHFRLYSHLNCF 198
Y P +LQ+ V++ KC A + IFA +++ +++ + +I+ + H LN F
Sbjct: 499 YDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQK-DTVSWNSMIMGLSHHGLADKALNLF 557
Query: 197 GSLLSS 180
+L S
Sbjct: 558 KEMLDS 563
>At1g75730.1 68414.m08797 expressed protein
Length = 589
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +2
Query: 20 EDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTCPTVDKPVSQSVSNL 187
+ G +ST +K G LK G LKQE + D TLP+ P ++ VS+ S L
Sbjct: 22 QSGSGFSTKSKKGMLKKLGFADEKLKQEMSYD-----TLPS-PDLENEVSKKKSKL 71
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 38 STITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTCPTVDKPVSQSVSN 184
S +TK R + WG + + + +PDL + P P D+ + + N
Sbjct: 47 SELTKTLRTQFWGVASFLSQPSSSPDLQERNQTPDHPEEDEDLIAGIKN 95
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTC 145
FS DG+Y ++ +DG L++W +V++ E + + P+C
Sbjct: 259 FSPDGRYLASAGEDGVLRVW----SVVEDERCEEHDVPKIDPSC 298
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWGTETNVLKQEYTPDLHLTSTLPTC 145
FS DG+Y ++ +DG L++W +V++ E + + P+C
Sbjct: 259 FSPDGRYLASAGEDGVLRVW----SVVEDERCEEHDVPKIDPSC 298
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 385 TKDSRVYEWNIEDGS--VKQTYNISIENNTKQGSNINAIKIIP 507
TKD + +IEDGS V +T + NNT G N A ++P
Sbjct: 634 TKDIKAL--HIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVP 674
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 385 TKDSRVYEWNIEDGS--VKQTYNISIENNTKQGSNINAIKIIP 507
TKD + +IEDGS V +T + NNT G N A ++P
Sbjct: 607 TKDIKAL--HIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVP 647
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to
LBA isoform gamma (GI:10257405) [Mus musculus]; similar
to beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -2
Query: 79 RTPYLKSAI-FSNCRIVFPVFGK 14
+TPY SA+ F+ C +VFP FG+
Sbjct: 298 KTPYSFSAVVFALCYLVFPYFGR 320
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +1
Query: 175 SFELKREPKQFKCEYKRK*VPMHSIRHTNGKLLIYSI-SQAKIINVWVPAKHFSAKVTAL 351
+FE P C ++++ + +GK+ + + ++ P + ++
Sbjct: 503 TFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCA 562
Query: 352 DWSRKYGLYSCTK-DSRVYEWNIEDGSVKQTY 444
D +R + + + +S + EWN +G+VK+TY
Sbjct: 563 DGTRLFSCGTSKEGESFIVEWNESEGAVKRTY 594
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +1
Query: 175 SFELKREPKQFKCEYKRK*VPMHSIRHTNGKLLIYSI-SQAKIINVWVPAKHFSAKVTAL 351
+FE P C ++++ + +GK+ + + ++ P + ++
Sbjct: 503 TFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCA 562
Query: 352 DWSRKYGLYSCTK-DSRVYEWNIEDGSVKQTY 444
D +R + + + +S + EWN +G+VK+TY
Sbjct: 563 DGTRLFSCGTSKEGESFIVEWNESEGAVKRTY 594
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 373 LYSC--TKD--SRVYEWNIEDGSVKQTY 444
L+SC +KD S + EWN +G+VK+TY
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTY 592
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 373 LYSC--TKD--SRVYEWNIEDGSVKQTY 444
L+SC +KD S + EWN +G+VK+TY
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTY 592
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 340 VTALDWSRKYGLY--SCTKDSRVYEWNIEDGSV 432
V A++W LY +C KD+R WN + G +
Sbjct: 255 VIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKI 287
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 373 LYSC--TKD--SRVYEWNIEDGSVKQTY 444
L+SC +KD S + EWN +G+VK+TY
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTY 592
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 373 LYSC--TKD--SRVYEWNIEDGSVKQTY 444
L+SC +KD S + EWN +G+VK+TY
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTY 592
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,400,701
Number of Sequences: 28952
Number of extensions: 334863
Number of successful extensions: 912
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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